Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g01f
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   0.74 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    24   0.74 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   3.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   5.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   9.1  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 111  IETNYHEVIGIPMAMELKSAEEGADFDGA 197
            IETN HE+I       L+   E A+F+ A
Sbjct: 1048 IETNEHEIIDKIEMFSLQILNERAEFNAA 1076



 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 111 IETNYHEVIGIPMAMELKSAEEGADFDGA 197
           IETN HE+I       L+   E A F  A
Sbjct: 670 IETNDHEIIDKIEMFSLQILNERAGFSAA 698


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 111 IETNYHEVIGIPMAMELKSAEEGADFDGA 197
           IETN HE+I       L+   E A+F+ A
Sbjct: 329 IETNEHEIIDKIEMFSLQILNERAEFNAA 357


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -3

Query: 395 LSGAETQLKRASLSAPGPPAVSRGHG 318
           LSG        SL  PG P +   HG
Sbjct: 132 LSGGPKHPDPGSLQVPGAPMMMSSHG 157


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 308 PHSLRDRGSLLEDQERSRTHASIGFRHHSVLHWWIQN 418
           P+S   R    +   RS THA   + + S++   IQN
Sbjct: 119 PNSALQRARADKTYRRSYTHAKPPYSYISLITMAIQN 155


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 287 HGGATVGQSNHHSGKM 240
           H G    QS HH G++
Sbjct: 231 HNGFMQEQSTHHQGQL 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,349
Number of Sequences: 336
Number of extensions: 1905
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)