Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g01f
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   1.8  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   2.3  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   2.3  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   5.4  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   7.2  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   9.5  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 117 TNYHEVIGIPMAMELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDGR-TSMCG 293
           +NY+EV    M+  ++ A+E +D     ++  SV  LGT     A++    +GR  S+CG
Sbjct: 316 SNYNEV----MSAMIRPAKEQSDLTDGSLISLSVKELGTTELYPAVLKHSPNGRFVSVCG 371


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 105 VPIETNYHEVIGIPMAMELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDG 275
           +PI  + H+  G  +A    + E GAD     +   S++GL + P   A V+   DG
Sbjct: 772 LPIHVHTHDSAGTAVASMAAALEAGADV--VDVATDSMSGLTSQPSFGA-VLASVDG 825


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 428 VSVNSESTSEELSGAETQLKRASLSAPGPPAVSRGHGASVAQQ 300
           V+ ++ +   EL  + T +   S+S+P    +   H AS A +
Sbjct: 10  VAASTSNKGNELCSSSTDITSLSVSSPNESVIHSSHSASEADE 52


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 201 IVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHT 314
           ++ G V G+G      AM+  +TD   S+ G+++ + T
Sbjct: 424 LIAGGVLGVGDPQLWLAMINYITDSYPSVAGSAIAAFT 461


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -3

Query: 410 STSEELSGAETQLKRASLSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSGKMWMS 231
           ST+  L G ET+L          PA+SR + +S    G +    ++V  S H     W S
Sbjct: 340 STTAYLYGQETELLSTPYCHTSYPAMSRLNSSS----GYTCVSSSSVTNSGHTENNTWRS 395


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 152 RHRDPDHLMVVGLYGYEGMGSSRQRKQRQYI 60
           +H D  HL+VV +   +GMG  R  +   Y+
Sbjct: 801 KHNDSVHLLVVVVGWKDGMGRDRYGQCSHYL 831


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,046
Number of Sequences: 5004
Number of extensions: 29061
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)