Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f23r
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.0  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    26   4.7  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   8.2  

>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 310 RCYNAVSQFFTRNECLNCVRKQQSVRDKFALAPAVSLLASYNV 438
           +CYN++      +ECLN +  ++        +PA+    S+N+
Sbjct: 157 KCYNSLQLVLLLDECLNNIMNEKLYAYDHDHSPAIYASESFNI 199


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 572 FTSNIFRKFHCIFNLLSKWWFDCNQKNCMF 483
           +TS   RKF  +F  L K+W       C F
Sbjct: 63  YTSKFERKFEHVFQALKKYWSPVFNACCAF 92


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 7/22 (31%), Positives = 18/22 (81%)
 Frame = -2

Query: 592 IAHFYSSLLQIYLENFTAFLIY 527
           ++HFY+++++++  N T+ L+Y
Sbjct: 422 MSHFYATMIKLFPSNRTSILMY 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,552
Number of Sequences: 5004
Number of extensions: 52652
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)