Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f23r
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z81496-7|CAB04073.1|  301|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF099000-2|AAK71875.1|  337|Caenorhabditis elegans Serpentine re...    28   5.8  

>Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical
           protein T01E8.7 protein.
          Length = 332

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -2

Query: 679 IHIIIYVKRGLRIYKKLHCNLSVVCLSFFIAHFYSSLLQIYLENFTAFLIYFPS 518
           + I IY+  G  I  K    +++V L  F  HF+S+L+ +++  F A  I  PS
Sbjct: 27  VGIPIYIFGGYCILCKTPNQMNLVKLVIFNLHFWSTLMDLFMGLFVAPFILLPS 80


>Z81496-7|CAB04073.1|  301|Caenorhabditis elegans Hypothetical
           protein F09C6.6 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 658 KRGLRIYKKLHCNLSVVCLSFFIAHFYSSLLQIYLEN----FTAFLIYFPSGGLIVIKRI 491
           +R LRI KK    +++  L  F+ H     +  YL++      +F+    S G+I +K I
Sbjct: 86  ERKLRIEKKHFVGIALCDLRIFLKHASMLTIYDYLKDRQDFIESFIEILKSDGIIKVKEI 145

Query: 490 VCF 482
           V F
Sbjct: 146 VFF 148


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 319  NAVSQFFTRNECLNCVRKQQSVRDKFALAPAVSLLASYNVNG 444
            NA++Q  T NE +  + +   +R    L    SLLAS NV G
Sbjct: 2606 NAITQAVTNNEHVVLILEDHQLRKNIFLQAINSLLASGNVPG 2647


>AF099000-2|AAK71875.1|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein128 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -2

Query: 679 IHIIIYVKRGLRIYKKLHCNLSVVCLSFFIAHFYSSLLQIYLENFTAFLIYFPSGG 512
           I + +++  G  I  K    +  V +S F+ HF+SSLL I +       + FP  G
Sbjct: 25  IQVPVHLFGGYVILFKTPQKMKSVKMSMFLLHFWSSLLDITICFLIVPYVIFPIPG 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,590
Number of Sequences: 27780
Number of extensions: 283209
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)