Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f23r
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   5.1  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   5.1  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   5.1  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   5.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.9  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 15  TTISSGKFKFHIVKLNKTSTEDGAYGHHQILKI 113
           TT ++     H+V +N+T+  DG+  +  ++++
Sbjct: 79  TTSTTKIIDGHVVTINETTYTDGSDDYSTLIRV 111


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 15  TTISSGKFKFHIVKLNKTSTEDGAYGHHQILKI 113
           TT ++     H+V +N+T+  DG+  +  ++++
Sbjct: 127 TTSTTKIIDGHVVTINETTYTDGSDDYSTLIRV 159


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 15  TTISSGKFKFHIVKLNKTSTEDGAYGHHQILKI 113
           TT ++     H+V +N+T+  DG+  +  ++++
Sbjct: 127 TTSTTKIIDGHVVTINETTYTDGSDDYSTLIRV 159


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 15  TTISSGKFKFHIVKLNKTSTEDGAYGHHQILKI 113
           TT ++     H+V +N+T+  DG+  +  ++++
Sbjct: 127 TTSTTKIIDGHVVAINETTYTDGSDDYSTLIRV 159


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 71  YRGWRIRPSSNPKNKLN 121
           Y GW +    N +NKLN
Sbjct: 205 YSGWYLNHDYNLENKLN 221


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 407 PRFHS*LHIMSMGFNNTYLTRPRKRETYNSFDYNQTTTWK 526
           P+  S L   ++  NN Y      +  YN+ +YN+   +K
Sbjct: 79  PKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYK 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,386
Number of Sequences: 438
Number of extensions: 3929
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)