Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f23r
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recogniti...    29   2.3  
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id...    27   9.5  

>At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 471

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 619 LSVVCLSFFIAHFYSSLLQIYLENFTAFLIYFPSGGLIVIKRIVCFSFPRSC*IRVVKTH 440
           +S  C S+ ++ F SSL  I+     +F + F    L+ +  I+ FSF  S  ++    H
Sbjct: 113 ISSYCPSYLLSWFSSSLPSIHRPLIRSFSVMFLEFFLLFVFSIIAFSFVLSISLKFALPH 172


>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
           identical to peroxisome biogenesis protein PEX1
           [Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
           Pfam profile PF00004: ATPase, AAA family; identical to
           cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
           partial cds GI:12006271
          Length = 1130

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 15  TTISSGKFKFHIVKLNKTSTEDGAYGHHQILK 110
           T  SSG+F FH+      ++E GA   H+I K
Sbjct: 728 TLSSSGRFDFHVQLAAPATSERGAILKHEIQK 759


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,425
Number of Sequences: 28952
Number of extensions: 245385
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)