Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f23f
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 54 2e-08
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 45 8e-06
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 1.6
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 26 3.7
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 26 3.7
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 4.9
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 6.5
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.5
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 25 8.6
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 53.6 bits (123), Expect = 2e-08
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +2
Query: 404 LTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAP 583
+++E EL F F+ + + + + NP + V+FK+KTTAPK YCVRPNSG + P
Sbjct: 1 MSVECSGELFFYPPFTTMSKELISVH----NPNPEPVIFKVKTTAPKHYCVRPNSGKIEP 56
Query: 584 NSKQEIAI 607
S + +
Sbjct: 57 KSTVNVQV 64
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 45.2 bits (102), Expect = 8e-06
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +2
Query: 482 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAI 607
+ L N + FK+KTTAPK+YCVRPN G + NS + +
Sbjct: 23 LELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEV 64
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 329 IFFLNLLNFANEILCL*YNKMPNQVLTIEPQNELKFKVNFSGLFEHG 469
+F + +F ++ + L KMPN+VLT E N+++ + +FS +G
Sbjct: 837 VFEVPKSHFVHKSMLLRGVKMPNRVLTPEDINQVRAERSFSSRRNNG 883
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 346 QIEKKYLSAMSAKANENCGMTNRHAQSTAHALSLSFRRR 230
Q+ + YLSA + +E + N HA ++ L++ R+
Sbjct: 366 QLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRK 404
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 607 NCDFLFRIWRKNSRIGTHAIFLWCC 533
N + +FR+WR RI HAI C
Sbjct: 233 NEEVIFRLWRNIDRIRLHAIRAQLC 257
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/53 (18%), Positives = 25/53 (47%)
Frame = +1
Query: 121 KYLLETYCAYLVHFTFAYINCDFLISIHKIQIALRIYAFERKETTHAQCSAHV 279
++ ++ +C Y ++ C ++ ++ I RI R++ HA S ++
Sbjct: 136 QHTVDHFCLYFIYIAIGVFGCSYIYTVTFIIAGERIARRIRQDYLHAILSQNI 188
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 519 NSTVSFVGFVSLM*VVQPCSKSPEKLTLNFNSFCGSIVSTWLGILLYYKHS 367
+ TVSF G S + P K T NF + +VS L + Y++S
Sbjct: 164 SKTVSFYGPTSAYDLSLPDITKDNKTTWNFQASYSPMVSECLKLFFRYQYS 214
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 481 HETNEPDKRYSAIQDQNNSTKE 546
HE +E KR ++++NN KE
Sbjct: 620 HEFDELQKRLQTLEEENNKAKE 641
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 281 IRHSTILVRFGRHRGKIFFLNLLNFANEILCL*YNKMPNQVLTIEPQNELKFKVNFSGLF 460
+ +TI FG R ++ LNLL+ +E+LC + P+ L I N +++ +
Sbjct: 238 LNENTIEDFFGLVRARLESLNLLDSDSELLC----EFPDLSLKINEDNVYASQIHLVDIL 293
Query: 461 E 463
E
Sbjct: 294 E 294
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 599 FLVSNLAQELQNWDARNISLVL 534
F VSN+ E+ N+D+R+ SL L
Sbjct: 415 FEVSNIEDEVTNFDSRSFSLRL 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,069
Number of Sequences: 5004
Number of extensions: 53158
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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