Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f23f
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0103 - 25847224-25847331,25847785-25847862,25848487-258485... 60 1e-09
08_01_0361 + 3165516-3165564,3166316-3166386,3166481-3166562,316... 59 3e-09
04_04_0742 + 27706150-27706198,27706306-27706376,27706490-277065... 53 2e-07
08_01_0282 + 2299688-2299859,2300314-2300384,2300780-2300861,230... 36 0.033
10_08_0845 - 20968051-20968188,20968769-20968843,20969399-209694... 35 0.043
07_03_0883 + 22280381-22280708,22282008-22282078,22282228-222823... 35 0.043
02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180... 33 0.13
11_03_0071 - 9589669-9590079,9592113-9592334,9592455-9592608,959... 33 0.18
02_05_0154 - 26330109-26330189,26330274-26330411,26330518-263306... 33 0.23
11_06_0355 + 22638029-22638281,22638365-22638593,22640039-226401... 29 2.9
02_05_1272 + 35373843-35374031,35374343-35374490,35374586-353747... 28 5.0
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482... 28 5.0
03_05_0540 + 25375261-25376931 27 8.7
02_05_0596 + 30239186-30239567,30239642-30239742,30240680-302407... 27 8.7
>02_05_0103 -
25847224-25847331,25847785-25847862,25848487-25848528,
25848641-25848763,25848856-25848971,25849062-25849143,
25849233-25849303,25849632-25849689
Length = 225
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +2
Query: 482 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAI 607
+ LTN T++ V FK+KTT+PKKYCVRPN+G++AP S + +
Sbjct: 30 LHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTSNVLV 71
>08_01_0361 +
3165516-3165564,3166316-3166386,3166481-3166562,
3166677-3166792,3166892-3167053,3167158-3167202,
3168097-3168174,3168632-3168742
Length = 237
Score = 58.8 bits (136), Expect = 3e-09
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = +2
Query: 389 MPNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNS 568
M L I+P +EL F F L + C+ M+LTN T+ V FK+KTT PK+YCVRPN
Sbjct: 1 MSASFLEIQP-SELSFP--FELLKQSSCS--MQLTNKTDHYVAFKVKTTNPKQYCVRPNI 55
Query: 569 GVLAPNSKQEIAI 607
GV+ P S ++ +
Sbjct: 56 GVVLPGSTCDVTV 68
>04_04_0742 +
27706150-27706198,27706306-27706376,27706490-27706571,
27706695-27706810,27706899-27707075,27707148-27707195,
27707786-27707863,27708724-27708837
Length = 244
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/73 (41%), Positives = 41/73 (56%)
Frame = +2
Query: 389 MPNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNS 568
M N +L + P +ELK + + C M+LTN TN V FK+KTT P+KY VR
Sbjct: 1 MSNTLLRVHP-SELKIPYEYKR--KRSCC--MQLTNKTNQYVAFKVKTTNPRKYSVRHAC 55
Query: 569 GVLAPNSKQEIAI 607
G+L P S +I +
Sbjct: 56 GILPPRSSCDITV 68
>08_01_0282 +
2299688-2299859,2300314-2300384,2300780-2300861,
2300949-2301067,2301338-2301415,2301500-2301619,
2301729-2301788
Length = 233
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 482 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAP 583
+++ N + V FK +TTAPK +RP G+LAP
Sbjct: 68 VKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAP 101
>10_08_0845 -
20968051-20968188,20968769-20968843,20969399-20969425,
20969512-20969649,20969765-20969880,20970000-20970081,
20970105-20970226,20970314-20970368
Length = 250
Score = 35.1 bits (77), Expect = 0.043
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +2
Query: 521 KIKTTAPKKYCVRPNSGVLAP 583
K+KTT+P+KY VRPN+ ++ P
Sbjct: 59 KVKTTSPRKYFVRPNASIIQP 79
>07_03_0883 +
22280381-22280708,22282008-22282078,22282228-22282345,
22282406-22282521,22283946-22284023,22284123-22284242,
22284332-22284391
Length = 296
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 482 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAP 583
+R+ N + V FK +TTAPK +RP +LAP
Sbjct: 120 IRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAP 153
>02_05_0213 +
26815889-26816475,26817718-26817788,26817985-26818073,
26818910-26818991,26819089-26819204,26819290-26819451,
26819531-26819680,26819969-26820037,26820375-26820491
Length = 480
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 521 KIKTTAPKKYCVRPNSGVLAPNSKQEIAI 607
++KTT P+KY VRP +G++ P I I
Sbjct: 249 QVKTTNPRKYSVRPTTGIVLPRGSCGITI 277
>11_03_0071 -
9589669-9590079,9592113-9592334,9592455-9592608,
9592981-9593212,9593303-9593558,9593850-9593870
Length = 431
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +2
Query: 410 IEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNS 589
++P EL+F F + C ++LTN T+ + F K KKY +PN G +AP S
Sbjct: 305 LDPVRELRFP--FEVKKDISCC--LQLTNQTDYFIAFNTKANQ-KKYSTQPNKGTIAPWS 359
Query: 590 KQEIAI 607
+ +
Sbjct: 360 SCYVTV 365
>02_05_0154 -
26330109-26330189,26330274-26330411,26330518-26330633,
26330782-26330863,26332706-26332770,26333016-26333112,
26334066-26334136,26334242-26334304,26334379-26334431,
26335143-26335192,26336295-26336340,26337014-26337019,
26337381-26337511,26337594-26337680,26338472-26338849
Length = 487
Score = 32.7 bits (71), Expect = 0.23
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2
Query: 524 IKTTAPKKYCVRPNSGVLAP 583
+KTT+P+KY VRPN+ ++ P
Sbjct: 350 VKTTSPRKYFVRPNANIVQP 369
>11_06_0355 +
22638029-22638281,22638365-22638593,22640039-22640189,
22640307-22640507,22641322-22641735
Length = 415
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 482 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSK 592
++LTN ++D V F T KKY + + GV+AP S+
Sbjct: 307 LQLTNKSDDIVEFYANTNK-KKYQIHRDQGVMAPWSR 342
>02_05_1272 +
35373843-35374031,35374343-35374490,35374586-35374704,
35374992-35375121,35375122-35375201
Length = 221
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 484 ETNEPDKRYSAIQDQNNSTKEILRASQFWSSCAKFETR 597
+ + D Y AI + + TK +R ++ WSSC K R
Sbjct: 104 DMGDKDMDYLAIIEYHKPTKPRVRHTRPWSSCTKSSNR 141
>02_02_0455 +
10445417-10446931,10447370-10447903,10448198-10448278,
10448699-10448770,10449643-10449669
Length = 742
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 243 ERDNACAVLCACLFVIPQFSFALADIAERYFFSIC 347
E+D+ C + A FV P+ + D +++YF +C
Sbjct: 472 EKDSLCEIWVAEGFVEPEGDIPILDTSKKYFEDLC 506
>03_05_0540 + 25375261-25376931
Length = 556
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 512 VLFKIKTTAPKKYCVRPNSGVLAP 583
V F+++ ++ VRP++G+LAP
Sbjct: 38 VAFRLQPAVRSRFAVRPHTGILAP 61
>02_05_0596 +
30239186-30239567,30239642-30239742,30240680-30240777,
30241448-30241656,30241754-30241806,30242069-30242137
Length = 303
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 593 VSNLAQELQNWDARNISLVL 534
VSN+ Q+L W AR+ +LVL
Sbjct: 138 VSNVRQDLNEWQARHATLVL 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,644
Number of Sequences: 37544
Number of extensions: 276794
Number of successful extensions: 659
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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