Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f23f
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35371| Best HMM Match : Motile_Sperm (HMM E-Value=1.1e-21)          76   3e-14
SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   4e-06
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  29   2.9  
SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6)                   28   6.7  
SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9)                 28   6.7  
SB_32114| Best HMM Match : PAN (HMM E-Value=0.11)                      27   8.9  
SB_10110| Best HMM Match : GASA (HMM E-Value=9.9)                      27   8.9  

>SB_35371| Best HMM Match : Motile_Sperm (HMM E-Value=1.1e-21)
          Length = 305

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 36/69 (52%), Positives = 47/69 (68%)
 Frame = +2

Query: 398 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 577
           QVL ++P  ELKF+    G F    T+ +RL NP+   V FK+KTTAPK+YCVRPNSG++
Sbjct: 6   QVLKLDPAIELKFR----GPFTEVVTSSLRLANPSEKRVCFKVKTTAPKRYCVRPNSGIV 61

Query: 578 APNSKQEIA 604
            PN   E+A
Sbjct: 62  EPNGAVEVA 70


>SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = +2

Query: 392 PNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSG 571
           P   LTI P  EL F  + S          + L N ++  V +K+KTT+P+ Y VRP+SG
Sbjct: 285 PGNYLTIRPAEELVFIGSMSSA---EILQTLTLKNTSSTQVAYKVKTTSPESYRVRPSSG 341

Query: 572 VLAPNSKQEIAI 607
           V+   S  E+++
Sbjct: 342 VINQGSSAEVSV 353


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 389  MPNQVLTIEPQNELKFKVNFS 451
            +PN  LTIEP  ELKFK   S
Sbjct: 1453 LPNVTLTIEPNVELKFKAGTS 1473


>SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -2

Query: 462 SKSPEKLTLNFNSFCGSIVSTWLGILLYYKH-----SISLAKFNRLRKNIFPRCR 313
           SK   KL LN+   C   ++TWL    +YKH     SI++  F RL   +F  CR
Sbjct: 544 SKMNSKLKLNY-VLC---LNTWL-FDQFYKHMIYTVSIAICSFGRLSSFVFAECR 593


>SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6)
          Length = 448

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -2

Query: 462 SKSPEKLTLNFNSFCGSIVSTWLGILLYYKH-----SISLAKFNRLRKNIFPRCR 313
           SK   KL LN+  +    ++TWL    +YKH     SI++  F RL   +F  CR
Sbjct: 279 SKMNSKLKLNYVLW----LNTWL-FDQFYKHMIYIVSIAICSFGRLSSFVFAECR 328


>SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9)
          Length = 448

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -2

Query: 462 SKSPEKLTLNFNSFCGSIVSTWLGILLYYKH-----SISLAKFNRLRKNIFPRCR 313
           SK   KL LN+  +    ++TWL    +YKH     SI++  F RL   +F  CR
Sbjct: 279 SKMNSKLKLNYVLW----LNTWL-FDQFYKHMIYIVSIAICSFGRLSSFVFAECR 328


>SB_32114| Best HMM Match : PAN (HMM E-Value=0.11)
          Length = 390

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +3

Query: 261 AVLCACLFVIPQFSFALADIAE--RYFFSIC*ILPTRYCAYSTIKCLTKC*LSNHKMN*N 434
           A +C  +F++  F F+L+   +  R+ F    I+ + +   S  +C  KC   +H  + N
Sbjct: 119 AAVCFFVFIVVPFDFSLSMYFKGFRHKFLEGPII-SEFSVQSDFECFQKCLRDSHCSSVN 177

Query: 435 LKLISQGS 458
           +K I++ S
Sbjct: 178 IKTITEES 185


>SB_10110| Best HMM Match : GASA (HMM E-Value=9.9)
          Length = 121

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 250 TTHAQCSAHVYSSFHNSRSL--WPTSRKDIFSQSVKFCQRDTVL 375
           T + +CSA +YSSF  S +L   P +   +   SVK     TVL
Sbjct: 66  TNYRECSARLYSSFDKSTTLTDMPCAPLTVVINSVKLELELTVL 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,139,300
Number of Sequences: 59808
Number of extensions: 359103
Number of successful extensions: 902
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)