Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f23f
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.33 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 389  MPNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDT 511
            +P+Q+L I+  + LK     +GL   G   Y R+  PT  T
Sbjct: 1243 LPSQLLNIKTLHGLKVIPTPAGLKTTGAAVYARVIAPTTIT 1283


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
 Frame = +1

Query: 265 CSAHV-----YSSFHNSRSLWPTSRKDIFSQSVK 351
           C+ HV     +  FHN   LW + +K +    ++
Sbjct: 787 CAGHVRLPYTFEQFHNKELLWTSVKKALMIVGIR 820


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
 Frame = +1

Query: 265 CSAHV-----YSSFHNSRSLWPTSRKDIFSQSVK 351
           C+ HV     +  FHN   LW + +K +    ++
Sbjct: 825 CAGHVRLPYTFEQFHNKELLWTSVKKALMIVGIR 858


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 187 FLISIHKIQIALRIYAF 237
           FL+ I  +QIA+ +YAF
Sbjct: 87  FLLFILLVQIAVAVYAF 103


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 390 ILLYYKHSISLAKF 349
           ILLYY+ S++L+ F
Sbjct: 315 ILLYYRDSLALSVF 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,819
Number of Sequences: 438
Number of extensions: 3798
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)