Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f22r
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    30   0.28 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    30   0.37 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.0  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   2.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.6  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   2.6  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.4  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    27   3.4  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   4.5  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    26   6.0  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    26   6.0  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   6.0  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.9  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.9  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 146 RFGLYEVDYDSPELTRTPRKSAFIFKEIVKSRTLDFDYKP 27
           R GL+  DYD   L + P+  A I K++  SR L   + P
Sbjct: 209 REGLFTTDYDRIPLIKVPKFDAIIEKKLANSRPLTALFGP 248


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 360  QKFVEAPWCGLNSVMRTNGPFLLVIKEYSNIIIIRRYF 473
            +K +   WC  N     N PF +V+  Y  +++  +YF
Sbjct: 929  RKILRKFWCRKNMTYDENSPFHVVVTSYQLVVLDAQYF 966


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 542 DFFGLNHYSTFLTYRNESVVGYYEIP--SYNDDVGVLFYDKEEWSI 411
           DF  L+  S  L    E+ V   +I   +YND V   +YD EEW++
Sbjct: 371 DFPSLSSISKDLCVPIETPVSEIDISLTAYNDPVISPYYDTEEWNL 416


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 151 VYPDIHSK--LSIKLQGVYSLISDPSLIASRRAFKYNLRCVIRSLSSKPVRVAKPFSVII 324
           + P+IH    +S  LQG   L  +P ++A+      NL C    + +    V  PF   I
Sbjct: 443 INPEIHLSPMVSALLQG---LTDNPRIVANCCWAFMNLVCHFAPVDNHQTSVMTPFYEAI 499

Query: 325 IGTLL 339
           IG+LL
Sbjct: 500 IGSLL 504


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = -3

Query: 656 YPEIVKQRVAAKSAEQGFLRSRFP-ELSPEEVQYIRGTSDFFGLNHYSTFLT 504
           YP+++ +RV     E GF+ S++P +L+     +++  S++  L H  TF++
Sbjct: 821 YPKLILKRVLRFLEEIGFITSQYPRKLTDTGALFLKHPSEWGVLQH--TFIS 870


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 488 VVGYYEIPSYNDDVGVLFYDKEEWSIGSHNRVKTTPWGFYKLLRQISN 345
           V+  Y+ P YND    + Y++   S  S N +K  P   + LLR +++
Sbjct: 476 VMHSYDPPLYNDTRAWMIYEENLPSYLSSNFLKEEPVVLFDLLRALND 523


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 320 ITENGFATLTGFEDNDRITHLRLYLNALLDAIKDGSDIRLYTPWSLMDNFEWMSGYTQR 144
           +T   +  L+G   + R  H     + LLD + + S  +L + WS  D F++    T +
Sbjct: 785 LTSKNWIPLSGLLFSLR-AHDTFMFDGLLDRLNEESRTKLVSSWSKQDAFDYSKSSTHQ 842


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 169 SKLSIKLQGVYSLISDPSLIASRRAFK-YNLRCVIRSLSSKPVRVA 303
           S+L  ++QG+  ++ +P LIA+ R  K  NL+ +    +  P R+A
Sbjct: 97  SELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQEHYNITPERIA 142


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 503 YRNESVVGYYEIPSYNDDVGVLFYDKEEWSIGSHNRVKTTPWGFYKLLRQISNFYNN 333
           +R+ S   YY   +   DV +L  D E W+I   +  + +P G      Q+S  YNN
Sbjct: 141 WRHSSFAQYYLYNTETKDVNMLGQDNEHWTI---SLAEWSPTG-----HQLSFVYNN 189


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 532 PKKSDVPRMY*TSSGLSSGNRERKKPC 612
           PKK+   +   TS+  SSGN   +KPC
Sbjct: 53  PKKNTAHKNSTTSTVASSGNTTMEKPC 79


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 326 IIITENGFATLTGFEDNDRITHLRLYLNALLDAIKDGSDIR 204
           III E+    + GFEDN+ + H R  + A L   K  S+I+
Sbjct: 150 IIIDESLGCKVKGFEDNNIVRHSRGKIEATLVHNKRISNIK 190


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = -3

Query: 347 NFYNNVPIIITENGFATLTGFEDNDRITHLRLYLNALLDAIKDGSDIRLYTPWSLMDNFE 168
           NF  N PI+ TE    +L     +D  T +  Y  +L      GS IRL   WS +  + 
Sbjct: 312 NFLFNQPIL-TELFDGSLPENTQSDT-TSMAPYQRSLQLEFMTGSLIRLSNLWSEISRWA 369

Query: 167 WMSGYTQ 147
              GYT+
Sbjct: 370 LCGGYTK 376


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 214 DPSLIASRRAFKYNLRCVIRSLSS 285
           DPSL++S + F+ + RC   S+SS
Sbjct: 267 DPSLLSSSKFFRSSPRCSTPSVSS 290


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 274 SLSSKPVRVAKPFSVIIIGT--LL*KFEIC 357
           SL+SKP R +KP  + ++ T  LL    +C
Sbjct: 54  SLASKPARYSKPLGLFVLDTNFLLSHLSLC 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,018
Number of Sequences: 5004
Number of extensions: 61895
Number of successful extensions: 173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)