Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f22r
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   1e-33
SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)                  118   5e-27
SB_39342| Best HMM Match : Glyco_hydro_1 (HMM E-Value=0.17)            64   8e-11
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)                33   0.17 
SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)              31   1.2  
SB_1465| Best HMM Match : PAN (HMM E-Value=0.012)                      30   2.1  
SB_34343| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)              28   8.4  

>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score =  140 bits (339), Expect = 1e-33
 Identities = 79/221 (35%), Positives = 115/221 (52%), Gaps = 9/221 (4%)
 Frame = -3

Query: 695 GQYGXPIFTDSGDYPEIVKQRVAAKSAEQGFLRSRFPELSPEEVQYIRGTSDFFGLNHYS 516
           G +  PI+  SGDYPEI+K  +A KS   G + SR PE + E+ + I+GT+D+F  NHYS
Sbjct: 281 GHFAVPIYV-SGDYPEIMKTLIANKSTAVG-IPSRLPEFTEEQKKMIKGTADYFATNHYS 338

Query: 515 TFLTYRNESVVGYYEIPSYNDDVGVLFYDKEEWSIGSHNRVKTTPWGFYKLLRQISNFYN 336
           + L   ++   G         D   +      W+  + N     PWG  K L+   + Y 
Sbjct: 339 SDLVQHHDFYNGAKTPQEMWTDGNYVLKGDPNWNRTAFNWA-VVPWGLRKFLKYFKDNYG 397

Query: 335 NVPIIITENGFATLTGF--------EDNDRITHLRLYLNALLDAIK-DGSDIRLYTPWSL 183
           +  +IITENG +    +        ED+ R+     Y+N +  A K DG  ++ Y  WSL
Sbjct: 398 DPEVIITENGCSAPGEYLKTVPERLEDDFRVDFFNRYINEVYKAYKLDGVKVKGYYAWSL 457

Query: 182 MDNFEWMSGYTQRFGLYEVDYDSPELTRTPRKSAFIFKEIV 60
           MDNFEW  GY   FG++ V++  P   R P+KSA  +K+IV
Sbjct: 458 MDNFEWFQGYNMPFGIHFVNFTDPNRPRLPKKSAIFYKKIV 498


>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
          Length = 332

 Score =  118 bits (284), Expect = 5e-27
 Identities = 63/131 (48%), Positives = 83/131 (63%), Gaps = 9/131 (6%)
 Frame = -3

Query: 416 SIGSHNRVKTTPWGFYKLLRQISNFYNNVPIIITENGFAT-----LTG---FEDNDRITH 261
           ++G+ + +  TP+G  K+L  I   YNN  IIITENGF+      L+G    ED  R+ +
Sbjct: 199 TVGAPDWLYCTPFGLRKILNWIKGNYNNPEIIITENGFSCDGEEDLSGDAALEDTHRVNY 258

Query: 260 LRLYLN-ALLDAIKDGSDIRLYTPWSLMDNFEWMSGYTQRFGLYEVDYDSPELTRTPRKS 84
           L+ YLN AL   IKDG  +  Y  WSLMDNFEW  GY  RFG++ VD+D P   RTP+KS
Sbjct: 259 LKGYLNQALKSVIKDGVQLTGYFLWSLMDNFEWDDGYKFRFGVHHVDFDDPHKHRTPKKS 318

Query: 83  AFIFKEIVKSR 51
           A +FKEIV ++
Sbjct: 319 ALVFKEIVANK 329


>SB_39342| Best HMM Match : Glyco_hydro_1 (HMM E-Value=0.17)
          Length = 147

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 35/82 (42%), Positives = 46/82 (56%)
 Frame = -3

Query: 662 GDYPEIVKQRVAAKSAEQGFLRSRFPELSPEEVQYIRGTSDFFGLNHYSTFLTYRNESVV 483
           GDYPE++KQ VA KS +QG +  R P  + EE  YI+GT DFF LN YS  LT   +  +
Sbjct: 64  GDYPEVMKQVVAEKSKKQG-IPCRLPSFTAEEKTYIKGTIDFFALNFYSASLTEHIDIPM 122

Query: 482 GYYEIPSYNDDVGVLFYDKEEW 417
              E  +Y  D  +    +E W
Sbjct: 123 NSNENWNYITDQEIKTSRREHW 144


>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
          Length = 659

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 145 LCVYPDIHSKLSIKLQGVYSLISDPSLIASRRAFKYNLRCVIRSLSSKPVRVAKP 309
           +  YP++ +++  +L  V S   DP LIA R++FK NL+     +    V V  P
Sbjct: 591 VAAYPEVQARIHQELDDVISFGRDP-LIADRKSFKLNLKGQCPDMEGVTVTVTWP 644


>SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)
          Length = 774

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/92 (26%), Positives = 38/92 (41%)
 Frame = -3

Query: 431 DKEEWSIGSHNRVKTTPWGFYKLLRQISNFYNNVPIIITENGFATLTGFEDNDRITHLRL 252
           D+EE+ IGS      T + F+K    I   Y         N   T   +ED  R    ++
Sbjct: 664 DREEYRIGSGGSESATDYSFHK----IGQDYKKSGFNKVRNEVVTTIKYEDRSRKVVGKV 719

Query: 251 YLNALLDAIKDGSDIRLYTPWSLMDNFEWMSG 156
            +  + + ++D S  R+    S    + WMSG
Sbjct: 720 NVTRMGETVEDESMKRMTIYPSRSRPWIWMSG 751


>SB_1465| Best HMM Match : PAN (HMM E-Value=0.012)
          Length = 406

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -3

Query: 479 YYEIPSYNDDVGVLFYDKEEWSIGSHNRVKTTPWG--FYKLLRQISNFYNNVPIIITENG 306
           +Y+  SYN   G L          + + +  TP+   FY +     +  + + I ITENG
Sbjct: 158 HYQCRSYNLVSGTLCQLLNVTKTTAKDSLVETPYSIHFYDISETFKSCLDFLKIGITENG 217

Query: 305 FATLTGFED 279
             T+TG +D
Sbjct: 218 IYTITGSDD 226


>SB_34343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 63  NFFEYKSRFSRRPCKFWTVVINFIKSKSLRISRHPFKIIHQAP 191
           N  +  SR+ R   + WT  I  +  KS +  R  F+I+ + P
Sbjct: 66  NMDKKSSRYGREEFRIWTRTIPNMDKKSSKYGREQFQILARVP 108


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 419 IPPCHKRVLQHHHYTKVFRSSRQLTHFCTSKMSSSDLNQ 535
           + PCH R  Q H  T+   SS  L+   T  +SS  L++
Sbjct: 748 VTPCHTRTFQSHPVTRTL-SSHTLSRPVTRTLSSHTLSR 785


>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
          Length = 550

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -3

Query: 602 LRSRFPELSPEEVQYIRGTSD-FFGLNHYSTFLTYR 498
           L+  FPEL+ E V+++  T+D    L+++  F+T++
Sbjct: 94  LQVNFPELNGECVEFLTATADATLALSNFRLFITFK 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,859,737
Number of Sequences: 59808
Number of extensions: 430986
Number of successful extensions: 1044
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)