Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f22r
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical ... 139 2e-33
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 123 1e-28
Z66497-8|CAA91285.2| 433|Caenorhabditis elegans Hypothetical pr... 33 0.15
AJ745071-1|CAG32977.1| 433|Caenorhabditis elegans core alpha1,3... 33 0.15
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF067211-16|AAC16988.3| 399|Caenorhabditis elegans Hypothetical... 29 3.2
Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein. 28 5.6
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein. 28 5.6
AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 28 5.6
U39471-1|AAA80132.4| 461|Caenorhabditis elegans Intestinal acid... 28 7.4
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 7.4
AF016687-8|AAK72065.1| 737|Caenorhabditis elegans Hypothetical ... 27 9.8
AF016687-7|AAK72063.1| 881|Caenorhabditis elegans Hypothetical ... 27 9.8
>AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical
protein E02H9.5 protein.
Length = 475
Score = 139 bits (336), Expect = 2e-33
Identities = 76/214 (35%), Positives = 120/214 (56%), Gaps = 6/214 (2%)
Frame = -3
Query: 680 PIFTDSGDYPEIVKQRVAAKSAEQGFLRSRFPELSPEEVQYIRGTSDFFGLNHYSTFLTY 501
PI + SGD+P ++++R+ F+ P+ S EE + I+G++DF G+N+Y +FL
Sbjct: 267 PILSGSGDFPVLMRERMP-------FI----PKFSEEEKEIIKGSTDFIGINYYLSFLVR 315
Query: 500 RNESVVGYYEIPSYNDDVGVLFYDKEEWSIGSHNRVKTTPWGFYKLLRQISNFYNNVPII 321
+ G D G +F + + I ++ P G K+LR + Y N P+
Sbjct: 316 APKD--GEKASSQSQHDGGYVFVEGKWDKICGETWIRYAPDGLLKILRYVKEKYANTPVF 373
Query: 320 ITENGFATLTG------FEDNDRITHLRLYLNALLDAIKDGSDIRLYTPWSLMDNFEWMS 159
ITENG + G F D RI ++ +L A+ A+ +G ++ YT W+LMDNFEW
Sbjct: 374 ITENGCMDIVGQDQEDAFHDQHRIDYISGHLEAVAKALDEGCNVIGYTVWTLMDNFEWDD 433
Query: 158 GYTQRFGLYEVDYDSPELTRTPRKSAFIFKEIVK 57
G+ +FGL EVD++SP+ TRT +KSA+ +KE +K
Sbjct: 434 GFELKFGLCEVDFESPDKTRTMKKSAYFYKEFIK 467
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 123 bits (296), Expect = 1e-28
Identities = 74/217 (34%), Positives = 118/217 (54%), Gaps = 9/217 (4%)
Frame = -3
Query: 680 PIFTDSGDYPEIVKQRVAAKSAEQGFLRSRFPELSPEEVQYIRGTSDFFGLNHYSTFLTY 501
PI TDSGD+P +++++ FL P+ S EE + I+G++DF G+N+Y + +
Sbjct: 267 PILTDSGDFPASMREKLP-------FL----PKFSEEEKKLIKGSTDFLGINYYLSHIV- 314
Query: 500 RNESVVGYYEIPSYNDDVGVLFYDKEEWSIGSHNRVKTTPWGFYKLLRQISNFYNNVPII 321
RN + G D F + + I V+ P G + LL+ + + YNN+P+
Sbjct: 315 RNLND-GEEPASQSERDAAYAFNEGKWEKICGETWVRYAPDGLFGLLKYVRDKYNNIPVF 373
Query: 320 ITENGFATLTGFE---------DNDRITHLRLYLNALLDAIKDGSDIRLYTPWSLMDNFE 168
ITENG L G E D RI + +L A+ A+++G ++ YT W+LMDNFE
Sbjct: 374 ITENGCMDLVGGEGRKEEEILDDKHRIKFISGHLEAVAKALEEGCNVIGYTLWTLMDNFE 433
Query: 167 WMSGYTQRFGLYEVDYDSPELTRTPRKSAFIFKEIVK 57
W G+ +FG+ VD+DSP+ TRT + SA ++ ++
Sbjct: 434 WDDGFGVKFGICRVDFDSPDKTRTMKYSAKYYQTFIR 470
>Z66497-8|CAA91285.2| 433|Caenorhabditis elegans Hypothetical
protein K08F8.3 protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -3
Query: 542 DFFGLNHYSTFLTYRNESVVGYYEIPSYNDDVGVLFYDKEEWSIGSHNRVKTTPWGFYKL 363
DF + +L Y + Y E + D V+F D GSH+ V PWGF ++
Sbjct: 342 DFKSVKEMGDYLNYLMNNKTAYMEYFEWRHDYKVVFLD------GSHHDVLERPWGFCQV 395
Query: 362 LR 357
R
Sbjct: 396 CR 397
>AJ745071-1|CAG32977.1| 433|Caenorhabditis elegans core
alpha1,3-fucosyltransferase protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -3
Query: 542 DFFGLNHYSTFLTYRNESVVGYYEIPSYNDDVGVLFYDKEEWSIGSHNRVKTTPWGFYKL 363
DF + +L Y + Y E + D V+F D GSH+ V PWGF ++
Sbjct: 342 DFKSVKEMGDYLNYLMNNKTAYMEYFEWRHDYKVVFLD------GSHHDVLERPWGFCQV 395
Query: 362 LR 357
R
Sbjct: 396 CR 397
>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical protein
ZK897.1 protein.
Length = 1396
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 503 TSKMSSSDL-NQKSLMFHGCIELLQGLALGTVSVRNLVQH 619
T++ SS + N FHGC ELL+ + + + V L +H
Sbjct: 1279 TAQQSSGQIGNSYVTFFHGCTELLRQVIIDEIWVNGLFEH 1318
>AF067211-16|AAC16988.3| 399|Caenorhabditis elegans Hypothetical
protein B0205.4 protein.
Length = 399
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -3
Query: 449 VGVLFYDKEEWSIGSHNRVK---TTPWGFYK-LLRQISNFYNNVPIIITENGFA 300
VGV + S+ S NR+ TP +YK ++QIS Y NV II + A
Sbjct: 259 VGVHIRHGMDISMNSRNRIHGHVDTPIEYYKRAIQQISKIYENVAFIICSDNVA 312
>Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical
protein F54B11.3b protein.
Length = 879
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = -3
Query: 596 SRFPELSPEEVQYIRGTSDFFGLNHYSTFLTYRNESVVGYYEIPSYNDDVGVLFYDKEEW 417
+R P L+ EE+ + G + N+ + + S+ ++E+P+ ++E W
Sbjct: 49 ARSPRLTEEELDALTGDLPY-ATNYTYAYSKIYDPSLPDHWEVPNLGGTTSGSLSEQEHW 107
Query: 416 SIGSHNR 396
S S +R
Sbjct: 108 SAASLSR 114
>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical
protein F54B11.3a protein.
Length = 1111
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = -3
Query: 596 SRFPELSPEEVQYIRGTSDFFGLNHYSTFLTYRNESVVGYYEIPSYNDDVGVLFYDKEEW 417
+R P L+ EE+ + G + N+ + + S+ ++E+P+ ++E W
Sbjct: 49 ARSPRLTEEELDALTGDLPY-ATNYTYAYSKIYDPSLPDHWEVPNLGGTTSGSLSEQEHW 107
Query: 416 SIGSHNR 396
S S +R
Sbjct: 108 SAASLSR 114
>AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein.
Length = 879
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = -3
Query: 596 SRFPELSPEEVQYIRGTSDFFGLNHYSTFLTYRNESVVGYYEIPSYNDDVGVLFYDKEEW 417
+R P L+ EE+ + G + N+ + + S+ ++E+P+ ++E W
Sbjct: 49 ARSPRLTEEELDALTGDLPY-ATNYTYAYSKIYDPSLPDHWEVPNLGGTTSGSLSEQEHW 107
Query: 416 SIGSHNR 396
S S +R
Sbjct: 108 SAASLSR 114
>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
Length = 1111
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = -3
Query: 596 SRFPELSPEEVQYIRGTSDFFGLNHYSTFLTYRNESVVGYYEIPSYNDDVGVLFYDKEEW 417
+R P L+ EE+ + G + N+ + + S+ ++E+P+ ++E W
Sbjct: 49 ARSPRLTEEELDALTGDLPY-ATNYTYAYSKIYDPSLPDHWEVPNLGGTTSGSLSEQEHW 107
Query: 416 SIGSHNR 396
S S +R
Sbjct: 108 SAASLSR 114
>AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical
protein ZC581.9 protein.
Length = 827
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3
Query: 641 KQRVAAKSAEQGFLRSRFPELSPEEVQYIRGTSDFFGLNHYSTFLTYRN 495
KQR A S + RS EL P+ Q + F L H + LTYRN
Sbjct: 773 KQRNARASERRARTRSPNAELDPQREQPPARPNSFTNLGH-NIVLTYRN 820
>U39471-1|AAA80132.4| 461|Caenorhabditis elegans Intestinal acid
phosphatase protein4 protein.
Length = 461
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = -3
Query: 416 SIGSHNRVKTTPWGFYKLLRQISNFYNNVPIIITENGFATLTGFEDNDRITHLRLYLNAL 237
S+ ++ ++ T W K +SN++N+ + G E N +L + NAL
Sbjct: 177 SVDNYCPLQDTIWNLAKTTDTVSNYFNSSAVTSLMGNLTNYCGEEINP--DNLWILYNAL 234
Query: 236 -LDAIKDGSDIRLYTPW---SLMDNFEWMSGYTQRF 141
++ + + +TPW SL + + ++ Q F
Sbjct: 235 KIEKQYYPAQFKQFTPWYTDSLFEQIDIVNSQVQDF 270
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 425 PCHKRVLQHHHYTKVFRSSRQLTHFCTSKMSSSDLNQKS 541
P H V HHH+ K SS + +S SSS + S
Sbjct: 90 PGHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSSSSSSS 128
>AF016687-8|AAK72065.1| 737|Caenorhabditis elegans Hypothetical
protein T21D12.9c protein.
Length = 737
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = -3
Query: 428 KEEWSIGSHNRVKTTPWGFYKLLRQISNFYNNVPIIITENGFATLTGFEDNDRITHLRLY 249
K +W NR+++ P G +++LRQ+ + I + + FA L G + L L
Sbjct: 316 KLKWLSLHSNRIQSLPSGSFRVLRQLEELILSANSIDSLHKFA-LVGMSS---LHKLDLS 371
Query: 248 LNALLDAIKDGS 213
N L ++DG+
Sbjct: 372 SNTLAVCVEDGA 383
>AF016687-7|AAK72063.1| 881|Caenorhabditis elegans Hypothetical
protein T21D12.9a protein.
Length = 881
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = -3
Query: 428 KEEWSIGSHNRVKTTPWGFYKLLRQISNFYNNVPIIITENGFATLTGFEDNDRITHLRLY 249
K +W NR+++ P G +++LRQ+ + I + + FA L G + L L
Sbjct: 316 KLKWLSLHSNRIQSLPSGSFRVLRQLEELILSANSIDSLHKFA-LVGMSS---LHKLDLS 371
Query: 248 LNALLDAIKDGS 213
N L ++DG+
Sbjct: 372 SNTLAVCVEDGA 383
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,546,138
Number of Sequences: 27780
Number of extensions: 330326
Number of successful extensions: 909
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -