Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f22r
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    26   0.40 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    24   1.6  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   2.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 154 YPDIHSKLSIKLQGVYSLISDPSLIASRRAFKYNLRCVIRSLSSKP 291
           +PDI  K+  +L  ++     P+        KY  RC++ +L   P
Sbjct: 367 HPDIQEKVIQELDEIFGDSDRPATFQDTLEMKYLERCLLETLRMYP 412


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 312 FSDYNRNVIVKIRNLSQKFVEAP-WCGLNSVMRTNGPFLLV 431
           + +YN+ +   I N+ Q  V  P +CG N   R  GP++ +
Sbjct: 329 YKNYNKKLYYNIINIEQIPVPVPVYCG-NFPPRPMGPWISI 368


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 422 PPCHKRVLQHHH 457
           P CHKR  + HH
Sbjct: 13  PECHKRFTRDHH 24


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 318 DYNRNVIVKIRNLSQKFVEAPWCGLNSVMRTNGPFLLVIKEYS 446
           DY R  +  ++N   +++  PW    +V R      ++ K+YS
Sbjct: 444 DYIRRYLPVLKNFPTRYIHEPWNAPLNVQR--AAKCIIGKDYS 484


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 586 GNRERKKPCSALLAATRCLTISG*SPLSVNIGXP 687
           GNRE   P S +L A    T+S   P    I  P
Sbjct: 308 GNRELLTPVSTMLPAVFAKTVSCIDPWIYAINHP 341


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 586 GNRERKKPCSALLAATRCLTISG*SPLSVNIGXP 687
           GNRE   P S +L A    T+S   P    I  P
Sbjct: 308 GNRELLTPVSTMLPAVFAKTVSCIDPWIYAINHP 341


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 139 PNLCVYPDIHS 171
           P +C YPDI+S
Sbjct: 225 PEVCDYPDIYS 235


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 139 PNLCVYPDIHS 171
           P +C YPDI+S
Sbjct: 225 PEVCDYPDIYS 235


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 139 PNLCVYPDIHS 171
           P +C YPDI+S
Sbjct: 225 PEVCDYPDIYS 235


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 155 YTQRFGLYEVDYDSPELTRTPRKS 84
           Y++RF    VD  SP  +R+P  S
Sbjct: 24  YSKRFSSSIVDRRSPSSSRSPSPS 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,618
Number of Sequences: 438
Number of extensions: 4613
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)