Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f22f
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    33   0.040
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    27   2.6  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    26   4.6  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    26   4.6  
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    25   8.1  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    25   8.1  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 32.7 bits (71), Expect = 0.040
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +2

Query: 305  VDYYRFSVSWTRILPTSFPDYINE---AGVAYYNNLIDELLKYNIEPMLTI-YH 454
            +DYYR+   W R   T F D   +   A VA  N L+  L K  ++ +++I YH
Sbjct: 2167 LDYYRYVGDWVRHFITLFEDKSQDVVVAAVAAQNTLVSALRKDQLDSLVSIAYH 2220


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 404 IDELLKYNIEPMLTIYHWDLPQKLQDMGGWTNPYIIDWYADYARV 538
           IDE+  Y+   +  +Y WD+ +    +  W + + +   A+YA +
Sbjct: 315 IDEIDSYDDAELNPLYSWDVTESNHSINIWFDFFTLGDGANYAEI 359


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 218 PVADNSTGDIANDSYKLYKRDVEMIR 295
           P+   S   +A +SY LY+RD+E+++
Sbjct: 639 PLTPFSLVMLAKESYVLYERDIELLQ 664


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 206 CDRHDPIYFQFFRQYS 159
           CDRHDP ++  F++++
Sbjct: 164 CDRHDPTFYPRFKKWA 179


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 334 PGH-RESVIINTKFSYHFNISFVKFIGIICDVSRRVIGYRAGYFVTGTI 191
           PGH R    I TKFS ++N+  V F+     + R V  +  G  +  TI
Sbjct: 86  PGHPRAKRWITTKFSGNYNVKAVVFVLNSATIDRDV--HEVGLMLFDTI 132


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 214 GYFVTGTIPYIFSFSVNIPSAFDLVRGCSSSKQ-KSFREFARSCIR 80
           GY    T+  + +F +  P    ++RG   S+Q      F   C+R
Sbjct: 90  GYHSVETVSLLIAFKIRYPQRITILRGNHESRQITQVYGFYDECLR 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,300
Number of Sequences: 5004
Number of extensions: 55385
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)