Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f22f
(582 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19) 198 2e-51
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.) 190 9e-49
SB_6196| Best HMM Match : rve (HMM E-Value=3.7e-12) 31 0.69
SB_20065| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05) 30 1.2
SB_9399| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_56919| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00038) 29 3.7
SB_56227| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 4.8
SB_50849| Best HMM Match : Galactosyl_T (HMM E-Value=0.066) 28 4.8
SB_48479| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_17388| Best HMM Match : rve (HMM E-Value=8.2e-17) 28 6.4
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20) 28 6.4
SB_46839| Best HMM Match : rve (HMM E-Value=7.3e-11) 28 6.4
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_38448| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12) 28 6.4
SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12) 27 8.5
SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08) 27 8.5
SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43) 27 8.5
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 27 8.5
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044) 27 8.5
SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_12462| Best HMM Match : Kinesin (HMM E-Value=0) 27 8.5
SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33) 27 8.5
SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71) 27 8.5
>SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)
Length = 204
Score = 198 bits (484), Expect = 2e-51
Identities = 85/156 (54%), Positives = 114/156 (73%)
Frame = +2
Query: 98 EFPKGFLFGAATASYQIEGAWNIDGKTENIWDRACHKVPSPVADNSTGDIANDSYKLYKR 277
+FP+ F++G ATA++QIEGAWN DGK NIWD HK + + +N DIA DSY
Sbjct: 14 QFPESFIWGVATAAHQIEGAWNEDGKGPNIWDAFSHKTGN-IHNNENADIACDSYHKTDE 72
Query: 278 DVEMIRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKYNIEPMLTIYHW 457
D+++++ LGV +YRFS+SW RILP D +N++GV YYN +ID+LL NI+P+ T+YH+
Sbjct: 73 DIQLLKSLGVSHYRFSISWARILPDGLLDVVNKSGVEYYNRVIDKLLAVNIQPVATLYHF 132
Query: 458 DLPQKLQDMGGWTNPYIIDWYADYARVLFQKFGDRV 565
DLPQ LQD GGW N +I+W+A YARV F+ FGDRV
Sbjct: 133 DLPQALQDKGGWLNSRVIEWFAGYARVCFKLFGDRV 168
>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 190 bits (462), Expect = 9e-49
Identities = 85/156 (54%), Positives = 108/156 (69%), Gaps = 1/156 (0%)
Frame = +2
Query: 101 FPKGFLFGAATASYQIEGAWNIDGKTENIWDRACHKVP-SPVADNSTGDIANDSYKLYKR 277
FP F +G+AT++YQIEGAW++DGK +WD H S + N TGD+A DSY YK
Sbjct: 36 FPADFEWGSATSAYQIEGAWDVDGKGLGLWDYLTHSHQFSHLFKNQTGDVACDSYHKYKE 95
Query: 278 DVEMIRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKYNIEPMLTIYHW 457
DV+++R LGV YRFS+SW RILP + IN G+ YYNNLI+ELL YNI+P+ TIYHW
Sbjct: 96 DVQLLRNLGVKAYRFSISWPRILPKGTKEIINTKGIEYYNNLINELLHYNIQPVATIYHW 155
Query: 458 DLPQKLQDMGGWTNPYIIDWYADYARVLFQKFGDRV 565
DLP + G WTN II+ + DYA + F+ FGDRV
Sbjct: 156 DLPVPFRMAGSWTNSSIIEHFNDYAEICFKNFGDRV 191
>SB_6196| Best HMM Match : rve (HMM E-Value=3.7e-12)
Length = 444
Score = 31.1 bits (67), Expect = 0.69
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 158 WNIDGKTENIWDRACHKVPSPVADNSTGDIANDSYKLYKRDVE--MIRELGVDYYRFSVS 331
W +G+ W + + AD TGD A+ + + RD+ I + GV+ R S
Sbjct: 374 WRYEGRAAPTWFVLAGDIDT--ADEDTGD-ADGNDGVSNRDIRDRTIGDDGVESRRSRPS 430
Query: 332 WTRILPTSFPDYI 370
TR +P F DYI
Sbjct: 431 RTRTVPLRFRDYI 443
>SB_20065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 215 SPVADNSTGDIANDSYKLYKRDVEMIRELGVDYYRFSVSWTR 340
+P+ STG +A++ + + R E+I E + Y +VSW R
Sbjct: 79 TPLVFGSTGGMASECQQFHSRLAELIAEKKGELYSTTVSWIR 120
>SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)
Length = 798
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Frame = +2
Query: 116 LFGAATASYQIEGAWNIDGKTENIWDRACHKVPSPVADNSTGDIANDSY------KLYKR 277
+F A +Y + WN+ E+ W KV + + DNS D + K +
Sbjct: 475 IFSAIVTAYNMH--WNLRTSPEDWWFTVIKKVANAIDDNSKNQAVRDMFVSHEGKKTLEV 532
Query: 278 DVEMIRELGVDYYRFSVSWTRILPTSF--PDYIN 373
V + G+DY F ++++ + P Y++
Sbjct: 533 SVPTLSIYGIDYDWFFGEMSKLIDENIKVPGYVD 566
>SB_9399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 651
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 215 SPVADNSTGDIANDSYKLYKRDVEMIRELGVDYYRFSVSWTR 340
+P+ STG +A++ + + + E+I E + Y +VSW R
Sbjct: 567 TPLVFGSTGGMASECQQFHSKLAELIAEKKGELYSTTVSWIR 608
>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 968
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 215 SPVADNSTGDIANDSYKLYKRDVEMIRELGVDYYRFSVSWTRILPTSF 358
+P+ STG ++++ + + R E+I E + Y +VSW R + F
Sbjct: 306 TPLVFGSTGGMSSECQQFHSRLAELIVEKKGELYSTTVSWIRAKVSPF 353
>SB_56919| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00038)
Length = 459
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 457 GLTTEITGYGRLDEPIYYRLVCGL 528
GL TE+ GYGRL E Y LV L
Sbjct: 282 GLVTELIGYGRLAELCVYGLVTEL 305
>SB_56227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 194 RACHKVPSPVADNSTGDIANDSYKLYKRDVEMIR 295
R KVPS S GDIAN S +L++ D E ++
Sbjct: 462 RVTPKVPSMCGLCSFGDIANRSLELWRADRECVK 495
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -2
Query: 395 CNKQLQLHLCNLGNSWVKYESRTQRICNNQHQVLLSFQHLVCKVYRNHLRC 243
C K Q+ + LG + R R C N + + +HL V + +RC
Sbjct: 623 CPKGYQVEMNKLGGTECVKRIRDSRACGNSVSITVCVRHLRENVNNSKIRC 673
>SB_50849| Best HMM Match : Galactosyl_T (HMM E-Value=0.066)
Length = 147
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 320 FSVSWTRILPTSFPDYINEAGVAYYNNLIDELLK 421
F VSW T +PDY + + N++++L++
Sbjct: 32 FYVSWNEFSETFYPDYCSGEIYVFSGNILEKLIR 65
>SB_48479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 251 NDSYKLYKRDVEMIRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLI 406
N +++++ +E+ + SVS R++ +FP Y G +Y LI
Sbjct: 92 NGAFEVFLSSLELFSSFSSVNFLASVSMERLVAVAFPFYHRATGKTFYGLLI 143
>SB_17388| Best HMM Match : rve (HMM E-Value=8.2e-17)
Length = 441
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 194 RACHKVPSPVADNSTGDIANDSYKLYKRDVEMIR 295
R KVPS S GDIAN S +L++ D E ++
Sbjct: 74 RVTPKVPSMGGLCSFGDIANRSLELWRADRECVK 107
>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
Length = 1362
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 484 GRLDEPIYYRLVCGLRQSSVPKIW 555
G D+ ++ VCG+RQ +P +W
Sbjct: 114 GAADDELHLVQVCGIRQRFIPMLW 137
>SB_46839| Best HMM Match : rve (HMM E-Value=7.3e-11)
Length = 565
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 194 RACHKVPSPVADNSTGDIANDSYKLYKRDVEMIR 295
R KVPS S GDIAN S +L++ D E ++
Sbjct: 10 RVTPKVPSMGGLCSFGDIANRSLELWRADRECVK 43
>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2391
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 194 RACHKVPSPVADNSTGDIANDSYKLYKRDVEMIR 295
R KVPS S GDIAN S +L++ D E ++
Sbjct: 2015 RVTPKVPSMGGLCSFGDIANRSVELWRADRESVK 2048
>SB_38448| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
Length = 343
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 257 SYKLYKRDVEMIRELGVDYYRFSVSWTRILPTS-FPDYINEAGVAYYNNLIDELLKYNIE 433
SYK+YKRD + + + S++W +LP++ +N+ ++++N I ++ ++
Sbjct: 276 SYKMYKRDFSKLDKEALLSDIQSINWIDVLPSNDGSKNVNDIFQSFFSN-ISAIIDKHVP 334
Query: 434 P 436
P
Sbjct: 335 P 335
>SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
Length = 652
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 257 SYKLYKRDVEMIRELGVDYYRFSVSWTRILPTS-FPDYINEAGVAYYNNL 403
SYK+YKRD + + + S++W +LP++ +N+ ++++N+
Sbjct: 520 SYKMYKRDFSKLDKEALLSDIQSINWIDVLPSNDGSKNVNDIFQSFFSNI 569
>SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)
Length = 824
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +2
Query: 209 VPSPVADNSTGDIANDSYKLYKRDVEMIRELGVDYYRFSVSWTRILPTSFP----DYINE 376
VP + + D+ ++ K Y D+E L V+ R+ WTR+ S P D +
Sbjct: 326 VPEVLVATNGCDL-EEAVKFYTDDLESPDVLDVELVRWRSKWTRVEEESIPRSAVDALKN 384
Query: 377 AGVAYYNNL 403
+Y N+
Sbjct: 385 CDAEFYPNV 393
>SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43)
Length = 1029
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 257 SYKLYKRDVEMIRELGVDYYRFSVSWTRILPTS-FPDYINEAGVAYYNNL 403
SYK+YKRD + + + S++W +LP++ +N+ ++++N+
Sbjct: 427 SYKMYKRDFSKLDKEALLSDIQSINWIDVLPSNDGSKNVNDIFQSFFSNI 476
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -2
Query: 560 DHQIF-GTELWRSPHTNR*YMGSSNLPYPVISVVSPSGKL*ASAQYCI*VIRQSDYCNKQ 384
DH + G W +PH + +S+ P I V P+ + Y + + +
Sbjct: 423 DHYSYPGFARWDNPHQMQWCANTSHDKSPWIMVGFPTSRFLTKVLY------KGEIKGYK 476
Query: 383 LQLHLCNLGNSWVKYESRTQ 324
+ + L G +W KYESR++
Sbjct: 477 VDIELTLDGKTWTKYESRSR 496
>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
Length = 1693
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 257 SYKLYKRDVEMIRELGVDYYRFSVSWTRILPTS-FPDYINEAGVAYYNNL 403
SYK+YKRD + + + S++W +LP++ +N+ ++++N+
Sbjct: 1305 SYKMYKRDFSKLDKEALLSDIQSINWIDVLPSNDGSKNVNDIFQSFFSNI 1354
>SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 872
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 257 SYKLYKRDVEMIRELGVDYYRFSVSWTRILPTS-FPDYINEAGVAYYNNL 403
SYK+YKRD + + + S++W +LP++ +N+ ++++N+
Sbjct: 376 SYKMYKRDFSKLDKEALLSDIQSINWIDVLPSNDGSKNVNDIFQSFFSNI 425
>SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 257 SYKLYKRDVEMIRELGVDYYRFSVSWTRILPTS-FPDYINEAGVAYYNNL 403
SYK+YKRD + + + S++W +LP++ +N+ ++++N+
Sbjct: 179 SYKMYKRDFSKLDKEALLSDFQSINWIDVLPSNDGSKNVNDIFQSFFSNI 228
>SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 803
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 137 SYQIEGAWNIDGKTENIWDRACHKVPSPVADNSTGDI 247
++ +GA+ ID TENI++ C + V + G +
Sbjct: 50 AFTFDGAYFIDSTTENIYNDICFPLVEGVLEGYNGTV 86
>SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)
Length = 759
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 257 SYKLYKRDVEMIRELGVDYYRFSVSWTRILPTS-FPDYINEAGVAYYNNL 403
SYK+YKRD + + + S++W +LP++ +N+ ++++N+
Sbjct: 252 SYKMYKRDFSKLDKEALLSDIQSINWIDVLPSNDGSKNVNDIFQSFFSNI 301
>SB_3348| Best HMM Match : Borrelia_orfA (HMM E-Value=0.71)
Length = 500
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 257 SYKLYKRDVEMIRELGVDYYRFSVSWTRILPTS-FPDYINEAGVAYYNNL 403
SYK+YKRD + + + S++W +LP++ +N+ ++++N+
Sbjct: 78 SYKMYKRDFSKLDKEALLSDIQSINWIDVLPSNDGSKNVNDIFQSFFSNI 127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,121,654
Number of Sequences: 59808
Number of extensions: 379178
Number of successful extensions: 1064
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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