Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f22f
         (582 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   4.1  
DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein O-fucosylt...    23   5.5  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    23   7.2  
AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.        23   7.2  
AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.        23   7.2  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   9.5  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   9.5  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 386 QLQLHLCNLGNSWVKYE 336
           Q Q+H+C    +W++YE
Sbjct: 218 QQQIHVCMARKAWLEYE 234


>DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein
           O-fucosyltransferase 1 protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 217 AGYFVTGTIPYIFSFSVNIPSAFDLVRGCSSSKQKS 110
           A  F+  T+P      V++ +  D VR C   K+ S
Sbjct: 217 AKQFIRDTLPRGAFIGVHLRNGIDWVRACEHVKESS 252


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 211 YFVTGTIPYIFSF 173
           YF TG + YI+SF
Sbjct: 243 YFFTGLVVYIYSF 255


>AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 202 TGTIPYIFSFSVNIPSAFDLVRG 134
           +  IP+ F+ S N PS+  L +G
Sbjct: 110 SNAIPFTFNISPNAPSSVTLQQG 132


>AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 202 TGTIPYIFSFSVNIPSAFDLVRG 134
           +  IP+ F+ S N PS+  L +G
Sbjct: 110 SNAIPFTFNISPNAPSSVTLQQG 132


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 257 SYKLYKRDVEMIRELGVDYYRFSVSWTRILPTSFPDY 367
           S+ L  +  +++  +G D+ + S+SW+   P+S P Y
Sbjct: 210 SFTLRLKPSDLLFVIG-DFNQPSISWSTADPSSSPAY 245


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
            channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 297  NLVLIITDSLCP 332
            NL+L++ D LCP
Sbjct: 1167 NLILLVVDVLCP 1178


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,597
Number of Sequences: 2352
Number of extensions: 13122
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55506924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)