Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f22f
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical ... 136 8e-33
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 128 2e-30
Z46343-4|CAA86460.1| 336|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF003384-4|AAO21379.1| 339|Caenorhabditis elegans Hypothetical ... 28 4.2
AF003384-3|AAK71373.1| 349|Caenorhabditis elegans Hypothetical ... 28 4.2
AC017117-6|AAF16615.1| 201|Caenorhabditis elegans Hypothetical ... 28 5.6
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 27 7.4
>AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical
protein E02H9.5 protein.
Length = 475
Score = 136 bits (330), Expect = 8e-33
Identities = 67/157 (42%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Frame = +2
Query: 98 EFPKGFLFGAATASYQIEGAWNIDGKTENIWDRACHKVPSPVADNSTGDIANDSYKLYKR 277
+FPK F ATA+YQIEGA +++G+ + WD A P + DNS D++ D YK
Sbjct: 6 KFPKNFKLATATAAYQIEGAKDLNGRGFSTWD-AIRLEPGRILDNSDPDLSCDGLLKYKE 64
Query: 278 DVEMIRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKYNIEPMLTIYHW 457
DV ++ E+GV YRFS+SW+RILP INE G+ +Y +L L + NIEP++T++H+
Sbjct: 65 DVALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTLFHF 124
Query: 458 DLPQKLQDMG-GWTNPYIIDWYADYARVLFQKFGDRV 565
D+P + D G W N + + +A + FQKFGD V
Sbjct: 125 DMPLAIYDNGTAWLNRENCEHFEKFADLCFQKFGDLV 161
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 128 bits (310), Expect = 2e-30
Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Frame = +2
Query: 98 EFPKGFLFGAATASYQIEGAWNIDGKTENIWDRACHKVPSPVADNSTGDIANDSYKLYKR 277
+FPK F ATA+YQIEGA N+DG+ + WD + + DNS D++ + YK
Sbjct: 6 KFPKNFQLATATAAYQIEGAKNLDGRGFSTWD-SIRSENGRIHDNSDPDLSCEGRLKYKE 64
Query: 278 DVEMIRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKYNIEPMLTIYHW 457
DV ++ ++GV YRFS+SW+RILP INE G+ +Y ++ L IEP++T++H+
Sbjct: 65 DVALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIEPIVTLFHF 124
Query: 458 DLPQKLQDMG-GWTNPYIIDWYADYARVLFQKFGDRV 565
D+P + D G W N + + +A + FQKFGD V
Sbjct: 125 DMPLSIYDNGTSWLNKENCEHFEKFADLCFQKFGDLV 161
>Z46343-4|CAA86460.1| 336|Caenorhabditis elegans Hypothetical
protein T23F11.5 protein.
Length = 336
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -3
Query: 310 INTKFSYHFNISFVKFIGIICDVSRRVIGYRAGYFVTGTIPYIFSFSVNIPSAFDLVRGC 131
++T+FS NIS+ I CD S Y +G + I + S+N F ++R
Sbjct: 1 MSTQFSLSSNISYDDPISFECDTS-----YDSGLELLKYIIQVTLLSINFILNFLIIRVT 55
Query: 130 SSSKQKSFRE 101
SK FRE
Sbjct: 56 MFSKNNDFRE 65
>Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical
protein W04G3.5 protein.
Length = 353
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 257 SYKLYKRDVEMIRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKY 424
S LYK++++ VD R S + + + T+ PDY N VA ++++ Y
Sbjct: 132 SLDLYKKEIQGFFSCPVDNLRASPFFLQHIKTNIPDYKNAIIVAKSPGVMNKATSY 187
>AF003384-4|AAO21379.1| 339|Caenorhabditis elegans Hypothetical
protein K07B1.4b protein.
Length = 339
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +2
Query: 290 IRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKYNIEPMLTIYHWDLPQ 469
++ LG ++ F +T +L + P Y+ Y L + Y + IY W+ P+
Sbjct: 20 LQTLGALHFFFITLFTPVLVLTVPFYM------LYTVLWPLIFLYGL---WMIYDWNSPK 70
Query: 470 KLQDMGGW-TNPYIIDWYADYARVLFQKFGD 559
K M W I WYA+Y V D
Sbjct: 71 KGAYMSNWFQRQRIHSWYANYFPVKLHTTSD 101
>AF003384-3|AAK71373.1| 349|Caenorhabditis elegans Hypothetical
protein K07B1.4a protein.
Length = 349
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +2
Query: 290 IRELGVDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKYNIEPMLTIYHWDLPQ 469
++ LG ++ F +T +L + P Y+ Y L + Y + IY W+ P+
Sbjct: 30 LQTLGALHFFFITLFTPVLVLTVPFYM------LYTVLWPLIFLYGL---WMIYDWNSPK 80
Query: 470 KLQDMGGW-TNPYIIDWYADYARVLFQKFGD 559
K M W I WYA+Y V D
Sbjct: 81 KGAYMSNWFQRQRIHSWYANYFPVKLHTTSD 111
>AC017117-6|AAF16615.1| 201|Caenorhabditis elegans Hypothetical
protein F43C11.4 protein.
Length = 201
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -3
Query: 340 TSPGHRE--SVIINTKFSYHFNISFVKFIGIICDVSRRVIGYRAGYFVTG 197
T PG + S II Y I+ + + GI+CD S V Y G G
Sbjct: 130 TPPGFTDFTSFIIQPPEPYDAGINTIDYFGIVCDGSLAVSQYPRGIMPLG 179
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 231 LSATGLGTL*QARSHIFSVFPSIFQAPSI 145
L+ + L TL QA SH S+ PS FQ P I
Sbjct: 117 LNMSKLITLNQAHSHPTSIAPSSFQVPVI 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,653,593
Number of Sequences: 27780
Number of extensions: 297564
Number of successful extensions: 848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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