Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f20r
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.4  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   5.6  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = +2

Query: 479 NRTSVNPGASGKECHRSKNN-RYEP-----TLIDTIEPAVSSCQQSGRG 607
           +R    PG +GK CH + N+ +  P     T +D I      C++   G
Sbjct: 52  HRCQCQPGFTGKYCHENINDCKVNPCENGGTCVDKINAFQCICKEGWEG 100


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 430 VIHLTSPVGLSNIIGTASLPTGEELQENFVGYIAVASGFGVTTNAGSIM 284
           ++ +T   GL N++   + P G   + NF   IA+ +G  +    GS++
Sbjct: 637 ILLITFQSGL-NVVSCINFPLGVLDRGNFDIEIALCNGIFLLLTLGSLL 684


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,254
Number of Sequences: 336
Number of extensions: 4497
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)