Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f20r
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 29 0.86
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 28 1.1
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 27 2.0
SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa... 27 3.5
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 4.6
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 4.6
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 26 6.0
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 26 6.0
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 25 8.0
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 8.0
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 28.7 bits (61), Expect = 0.86
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 167 RHLSW*LRWPSCYYKKQPSYFDWYY 93
RHLS + W SC+YK Y W++
Sbjct: 309 RHLSD-VEWKSCFYKSYYEYRSWFH 332
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 54 GKPIS--QPKPEPNDVIPIKIRRLFLVITRGPPESPRQVPT-PPTP 182
GKP S +P E NDV PI+ L L G P +P+ P P
Sbjct: 315 GKPFSSIEPTVELNDVCPIEGTGLILTANEGSPMHAFYIPSLNPAP 360
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 346 SFLVVPLQLANWLCRLYSINQQDSSDG*QQHR 441
S +PL A W Y NQQ++ +G Q H+
Sbjct: 584 SLSFIPLAAAFWQSNFYLGNQQNAVEGDQDHK 615
>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 428 DSNIVAVKNREPVGVQYNRTSVNPGASGKECHR 526
D+N VK E G+Q+NR VN SGK R
Sbjct: 14 DNNRFLVKRPEFGGIQFNREPVN--VSGKNAQR 44
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 4.6
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Frame = +3
Query: 288 IDPALVVTPKPDATAIYPTKFSCSSSP--VGKLAVPIIFDKPTGLVRWMTA---TSLR*R 452
+ P + V+P +YPT F SS P V P F + + A T LR
Sbjct: 306 VSPNIPVSPSSSFVPMYPTTFP-SSKPQIVNAPPAPSYFSPGSSFGAQLCANGSTLLRAD 364
Query: 453 TGNQSGCSITELV-STLVPPVKSVTDPRTTVMSQP*LIP--SNQQ*AAVNSLVGVTSVAP 623
T Q G ++ ++ S L+ P ++ +++V + P L P S A +SL + AP
Sbjct: 365 T-KQYGLALPKITNSNLISPNQTFNPVKSSVKALPTLEPPSSPSHATATSSLHTLFHTAP 423
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 515 ECHRSKNNRYEPTLIDTIEPAVSSCQQS 598
E H+S N + TL+ +EP ++ +QS
Sbjct: 254 EKHKSDNKKTFGTLVSFVEPTITGSEQS 281
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 602 YQTVDSCSLLVRWYQSRLAHNGCSWIG 522
Y +++SC +L+ Y S NGC G
Sbjct: 263 YPSIESCIILLMAYTSYFFSNGCHMSG 289
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 205 ARCRGTPTSTCCYLSLPGSRD 267
A C +P S CYL+ P SRD
Sbjct: 127 AVCALSPNSENCYLAYPDSRD 147
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 520 SPIQEQPL*ANLD*YHRTSSEQLSTVW*G*QASLRRHPRLH 642
SP+Q+ P+ A ++ +SE ++++W S + P LH
Sbjct: 155 SPLQDLPIVAKTKLHNCPNSEPVTSIWNQRSLSSGKPPSLH 195
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 8.0
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = -2
Query: 445 RNDVAVIHLTSPVGLSNIIGTASLPTGEELQENFVGYIAVASGFGVT-TNAGSIMPNQYL 269
+ D+A +H S VG+++++ S P + + +T T S + L
Sbjct: 511 KTDIADLHTDSKVGIADVLSPIS-PDAALQSDGPLKKAKEPEESSITPTTPPSFNVGESL 569
Query: 268 SRVNLEVIDNSMCSWAFPGILQPTNLCTSGVGGVGTCRGDSG 143
SR + + + S P +L T+ C G+G + T G
Sbjct: 570 SRRSASPLQHPRTS---PDMLDKTSPCKRGLGTITTVHKKHG 608
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,934
Number of Sequences: 5004
Number of extensions: 72243
Number of successful extensions: 191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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