Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f20r
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 33 0.22
04_04_1152 - 31289365-31289457,31289559-31289637,31289716-312897... 31 1.2
02_05_0239 + 27101440-27101904 30 1.6
04_01_0352 - 4619946-4619984,4620062-4620133,4621515-4621880,462... 30 2.1
03_05_0543 - 25404630-25405408,25405461-25405605 30 2.1
03_01_0070 + 577328-577835,578106-578136,578184-578196 29 2.7
01_05_0490 + 22672241-22674679 29 2.7
09_06_0278 + 21991016-21992120,21992341-21992702,21992766-219934... 29 3.6
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552... 29 3.6
05_07_0052 + 27340499-27340597,27340708-27340801,27341206-273414... 29 4.8
05_04_0281 + 19779156-19779805,19781303-19781475,19781909-197821... 28 6.3
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 28 6.3
06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438... 28 8.3
03_05_0535 + 25352283-25352562,25352661-25352788,25352928-253530... 28 8.3
01_06_1493 + 37753816-37755558 28 8.3
01_06_1490 - 37732724-37735020,37735803-37735980 28 8.3
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 48 AAGKPISQPK--PEPNDVIPIKIRRLFLVITRGPPESPRQVPTPPTPLV 188
AA P S P P P+ ++P K RRLF R +P P PPTP V
Sbjct: 19 AAASPFSPPPSLPLPSALMPPKKRRLFTPAPR-HAATPPPPPPPPTPAV 66
>04_04_1152 -
31289365-31289457,31289559-31289637,31289716-31289758,
31289846-31290037,31290302-31290377,31290482-31290535,
31291274-31291342,31291437-31291700
Length = 289
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 479 YTAPRLVPGSLPQRCCCHPSDESCWFIEYNRHSQFANWRGTT 354
YTAP+L PGS P + P+ + E HS F++W G++
Sbjct: 163 YTAPKLTPGSTP-KFLSGPTSPTKSLSEV--HSTFSSWHGSS 201
>02_05_0239 + 27101440-27101904
Length = 154
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 93 VIPIKIRRLFLVITRGPPESPRQVPTPP-TP 182
V+ + + LF + RGPP P PTPP TP
Sbjct: 23 VLGVWLCYLFQAVARGPPPDPPPPPTPPCTP 53
>04_01_0352 -
4619946-4619984,4620062-4620133,4621515-4621880,
4622240-4622713
Length = 316
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 494 NPGASGKECHRSKNNRYEPTLIDTIEPAVSSCQQSGRGNKR 616
+P A+ +ECHR + RY P E +S +G G KR
Sbjct: 17 HPPAAAQECHRLRRRRYVPAAAAASEDGDNS--SNGGGEKR 55
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 3 ICLLKKSMNEVTRA*AAGKPISQPKPEPNDVIPIKIRRLFLVITRGPPESPRQVPTP-PT 179
I L KK+ + +T + P++ P +P P + L R PP PR+ P P P
Sbjct: 107 ITLPKKTPSPLTPS-PTPSPVTPPPQQPPQPEPRRPPAAPLPGVRTPPSPPRRAPAPAPA 165
Query: 180 PL 185
PL
Sbjct: 166 PL 167
>03_01_0070 + 577328-577835,578106-578136,578184-578196
Length = 183
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 63 ISQPKPEPNDVIPIKIRRL-FLVITRGPPESPRQVPTP-PTP 182
+S+P P+PN+ P+ + L + R P P Q+P P P P
Sbjct: 42 VSRPNPDPNNPTPLTTTVVTVLRVRRLGPHHPLQIPRPDPLP 83
>01_05_0490 + 22672241-22674679
Length = 812
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +3
Query: 57 KPISQPKPEPNDVIPIKIRRLFLVITRG-PPESPRQVPTPPTP 182
+P P P P P RR + T PP SP P PP P
Sbjct: 661 RPAPPPPPPPQQQPPFYPRRAVVYYTYPLPPPSPPLPPPPPPP 703
>09_06_0278 +
21991016-21992120,21992341-21992702,21992766-21993459,
21994064-21994191
Length = 762
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Frame = -2
Query: 319 GFGVTTNAGSIMPNQYLSRVNLEVIDNSMCSWAFPG--ILQPTNLCTSGVGGVGTCRGDS 146
GFG+T N S P + L+V++ S+ + I N+ + G GT G
Sbjct: 59 GFGLTCNTTSNPPRLMIGNSTLQVVNISLANSTLRAVDIDGAVNITYGQIDGNGTWVGVV 118
Query: 145 GGPLVITRNNRRIL-----IGITSFGSG 77
P ++ ++L I +T GSG
Sbjct: 119 ASPYIVNETLNQLLVTGCNIQVTLVGSG 146
>03_05_0820 +
27951971-27954236,27954746-27955008,27955169-27955288,
27957790-27957856,27958310-27958515
Length = 973
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 193 LCTSGVGGVGTCRGDSGGPLVITRNNRRILIGITSFGSGFGCEIGFPAAYAR 38
LC++ GT S PLV++ + ++ G+T+ GS + AA+AR
Sbjct: 77 LCSAAAAASGTAAASSNLPLVLSIHAHALVSGLTADGSVASHLLTAYAAFAR 128
>05_07_0052 +
27340499-27340597,27340708-27340801,27341206-27341415,
27341727-27342439
Length = 371
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = -2
Query: 403 LSNIIGTASLPTGEELQENFVGYIAVASGF-----GVTTNAGSIMPNQYLSRVNLEVIDN 239
++ ++ + LP E L+EN V Y + GF G T AG + S V+D+
Sbjct: 64 VAGMVWSGDLPDVETLKENIVAYFNILQGFLLGCHGSTVGAGPTLHKSICSSAK-NVVDS 122
Query: 238 S 236
S
Sbjct: 123 S 123
>05_04_0281 +
19779156-19779805,19781303-19781475,19781909-19782162,
19782265-19782339,19782431-19782538,19782914-19783031,
19783347-19783482,19785623-19785797,19786333-19786860,
19787624-19787836,19787850-19787882
Length = 820
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 464 LVPGSLPQRCCCHPSDESCW 405
LV +LP R CCHP + W
Sbjct: 764 LVTKALPHRQCCHPETSARW 783
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 165 PTPPTPLVHKFVGCKMPGNAHEHMLLSITSRFTRL-RYWFGMIDP 296
PT +VH GC +PGN+H+ + + R R YW + P
Sbjct: 282 PTRSFDMVH-CAGCLVPGNSHDELYMLEIDRLLRPGGYWVLAMPP 325
>06_01_0606 -
4382133-4382704,4383017-4383336,4384152-4384258,
4384339-4384512,4384956-4385204,4386831-4386986
Length = 525
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 60 PISQPKPEPND 92
P++QPKPEPND
Sbjct: 449 PVAQPKPEPND 459
>03_05_0535 +
25352283-25352562,25352661-25352788,25352928-25353081,
25353182-25353379,25353467-25353618
Length = 303
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 184 SGVGGVGTCRGDSGGPLVITRNNRRILI 101
SG GG G G GG V+ R RR+L+
Sbjct: 27 SGGGGGGGGGGGGGGGAVVRRTRRRVLL 54
>01_06_1493 + 37753816-37755558
Length = 580
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 641 CKRGCLRSDACYPYQTVDSCSL 576
C++ CLRS +C Y SCSL
Sbjct: 157 CEQACLRSCSCTAYSYNGSCSL 178
>01_06_1490 - 37732724-37735020,37735803-37735980
Length = 824
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 641 CKRGCLRSDACYPYQTVDSCSL 576
C++ CLRS +C Y SCSL
Sbjct: 388 CEQACLRSCSCTAYSYNGSCSL 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,586,558
Number of Sequences: 37544
Number of extensions: 555859
Number of successful extensions: 2187
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2175
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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