Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f20r
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    58   6e-11
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 58.4 bits (135), Expect = 6e-11
 Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 12/212 (5%)
 Frame = -2

Query: 616 TLVTPTRLLTAAHCWFDGINQGWLITVVLG----SVTLFTGGTRVDT-SSVILHPDWFPV 452
           T+++   +LTAAHC  D       + +V+G    S    T  T + + + VI+HP  + +
Sbjct: 191 TIISKRYVLTAAHCIID--ENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPK-YDI 247

Query: 451 LYR-----NDVAVIHLTSPVGLSNIIGTASLPTGEELQENFVGYIAVASGFGVTTNAGSI 287
           + +     ND+A++     +   + +G A LP  +   ++F G      G+G T+  G  
Sbjct: 248 IEKDDWQINDIALLKTEKDIKFGDKVGPACLPF-QHFLDSFAGSDVTVLGWGHTSFNG-- 304

Query: 286 MPNQYLSRVNLEVIDNSMCSWAFPGILQPTNLCTSGVGGVGTCRGDSGGPLV--ITRNNR 113
           M +  L +  L ++    C + + G +    +C    G    C+ DSGGP++    R  R
Sbjct: 305 MLSHILQKTTLNMLTQVEC-YKYYGNIMVNAMCAYAKGK-DACQMDSGGPVLWQNPRTKR 362

Query: 112 RILIGITSFGSGFGCEIGFPAAYARVTSFIDF 17
            + IGI S+G+  G    +P    +V S+ID+
Sbjct: 363 LVNIGIISWGAECG---KYPNGNTKVGSYIDW 391


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 148  SGGPLVITRNNRRILIGITSFGS 80
            +G P+V+   N+ + +G+++ GS
Sbjct: 1201 AGKPIVLASGNKNVGVGVSNSGS 1223


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 194 LMYERSWWCRHLSW 153
           L YE  WW   L W
Sbjct: 520 LTYEYPWWSHVLGW 533


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 194 LMYERSWWCRHLSW 153
           L YE  WW   L W
Sbjct: 573 LTYEYPWWSHVLGW 586


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -1

Query: 239 QHVLVGVPRHLAAYKLMYERSWWCRHLSW 153
           QH  V    H   + +M +  W   HL+W
Sbjct: 69  QHYNVDEYSHTVDFHVMLKLMWEQSHLTW 97


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 495 LTLVLLYCTPTGSRFF 448
           LTLV +   P G+RFF
Sbjct: 641 LTLVWMIIEPPGTRFF 656


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 495 LTLVLLYCTPTGSRFF 448
           LTLV +   P G+RFF
Sbjct: 731 LTLVWMIIEPPGTRFF 746


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -2

Query: 157 RGDSGGPLVITRNNRRILIGITSFGSGFGCEIGF 56
           + D GGPL +         G + F    G E G+
Sbjct: 441 QSDDGGPLSLKNKVETTHSGTSLFRINLGIECGY 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,969
Number of Sequences: 438
Number of extensions: 6542
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)