Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f20r
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 31 0.56
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 31 0.74
At4g27595.1 68417.m03964 protein transport protein-related low s... 30 1.7
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 29 2.3
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 2.3
At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferlin... 29 2.3
At5g52910.1 68418.m06566 timeless family protein contains Pfam d... 29 3.0
At3g05920.1 68416.m00668 heavy-metal-associated domain-containin... 29 3.0
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 4.0
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 4.0
At3g06620.1 68416.m00769 protein kinase family protein contains ... 29 4.0
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR... 28 5.2
At2g02660.1 68415.m00205 hypothetical protein 28 5.2
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 28 6.9
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 28 6.9
At2g47960.1 68415.m05999 expressed protein 28 6.9
At4g00540.2 68417.m00075 myb family transcription factor 27 9.2
At4g00540.1 68417.m00074 myb family transcription factor 27 9.2
At1g70480.1 68414.m08109 expressed protein contains Pfam profile... 27 9.2
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 129 ITRGPPESPRQVPTPPTPLVH 191
+T+ PP P P PPTP+VH
Sbjct: 703 VTKVPPPPPPAPPAPPTPIVH 723
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 60 PISQPKPEPNDVIPIKIRRLFLVITRGPPESPRQVPTPPTPLV 188
P+S P P P +P T P P PTPPTP V
Sbjct: 180 PVSPPPPTPTPSVPSPPDVTPTPPTPSVPSPPDVTPTPPTPSV 222
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 147 ESPRQVPTPPTPLVHKFVGCKMPGNA 224
E+PR P+PPTP V K K GN+
Sbjct: 2 ETPRSKPSPPTPRVSKPTVTKSDGNS 27
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +3
Query: 60 PISQPKPEPNDVIPIKIRRLFLVITRGPPESPRQVPTPPTPLVH 191
P P PEP P IT PP PR +P PP P +H
Sbjct: 79 PPPSPSPEPEHYPPPPYHHY---ITPSPPP-PRPLPPPPPPPLH 118
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 60 PISQPKP-EPNDVIPIKIRRLFLVITRGPPESPRQVPTPPTPL 185
P P+P +P D P+K RR PP P P PP+P+
Sbjct: 472 PKESPQPNDPYDQSPVKFRR-------SPPPPPVHSPPPPSPI 507
>At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferling
(PFI) almost identical to tubulin folding cofactor E
(Pfifferling; PFI) GI:20514267 from [Arabidopsis
thaliana]; identical to cDNA tubulin folding cofactor E,
GI:20514266
Length = 531
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -2
Query: 364 EELQENFVGYIAVASGFGVTTNAGSIMPNQYLSRVNLEVIDNSMCSWAFPGIL 206
EEL + Y+ V+S GV+++ GSI+PN L L++ N + W G L
Sbjct: 134 EELTSASLSYLGVSS-LGVSSDLGSILPNLKL----LDLTGNLISDWEEIGAL 181
>At5g52910.1 68418.m06566 timeless family protein contains Pfam
domains PF05029: Timeless protein C terminal region and
PF04821: Timeless protein
Length = 1141
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +2
Query: 419 QMDDSNIVAVKNREPVGVQYNRT---SVN---PGASGKECHRSKNNRYEPTLIDTIEPAV 580
+ +D ++A KNR+ Q N+ S+N PG S R++ + +EPT +
Sbjct: 1005 ESEDETLLAFKNRKSRKNQKNKQQTGSINEITPGGSEDNTERNETSLHEPTAGEE----- 1059
Query: 581 SSCQQSGRGNKRRSADTHVYIIDDG 655
QS + R ++T V+I D+G
Sbjct: 1060 EDNDQSYITRESRQSETDVHISDNG 1084
>At3g05920.1 68416.m00668 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 126
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 105 KIRRLFLVITRGPPESPRQVPTPPTP 182
KI++ ++I+ GPP P + P PP P
Sbjct: 60 KIKQKPVIISVGPPPKPPEPPKPPEP 85
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Frame = +2
Query: 368 SWQTGCADYIR*TNRTRQMDDSNIVAVKNREPVGVQYNRTSVNPGAS-GKECHRSKNNRY 544
+W IR +MDD + EPV +Q+ ++ S G H +
Sbjct: 443 TWPVASVGKIRKPVVNTEMDDGTEHQLHKAEPVNLQFGHFGISAWPSDGATSHAGSVDDL 502
Query: 545 EPTLIDTIEPAVSSCQQSGR---GNKRRSADTHVYIIDDGDDQTG 670
+I+T SSC S R G + + D DD+ G
Sbjct: 503 RADIIETGSRHYSSCCSSPRTSDGPSKELMEEQSVNGSDEDDEEG 547
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Frame = +2
Query: 368 SWQTGCADYIR*TNRTRQMDDSNIVAVKNREPVGVQYNRTSVNPGAS-GKECHRSKNNRY 544
+W IR +MDD + EPV +Q+ ++ S G H +
Sbjct: 462 TWPVASVGKIRKPVVNTEMDDGTEHQLHKAEPVNLQFGHFGISAWPSDGATSHAGSVDDL 521
Query: 545 EPTLIDTIEPAVSSCQQSGR---GNKRRSADTHVYIIDDGDDQTG 670
+I+T SSC S R G + + D DD+ G
Sbjct: 522 RADIIETGSRHYSSCCSSPRTSDGPSKELMEEQSVNGSDEDDEEG 566
>At3g06620.1 68416.m00769 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 773
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 425 DDSNIVAVKNREPVGVQYNRTSVNPGASGKECHRSKNNRYEPTLIDTIEPAVSSCQQSGR 604
D ++ V+ K R + N +++ G SG + H+ +N + TL+D + A SS + R
Sbjct: 278 DLASKVSNKVRSKMRAGDNSATLSEGGSG-DSHQKDHNVFGATLVDHRDDAASSGASTPR 336
Query: 605 GN 610
G+
Sbjct: 337 GD 338
>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1103
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 167 RHLSW*LRWPSCYYKKQPSYFDWYYIIWL 81
R L W LRW +C K+ PS F Y++ L
Sbjct: 580 RKLKW-LRWENCPLKRLPSNFKAEYLVEL 607
>At2g02660.1 68415.m00205 hypothetical protein
Length = 421
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -2
Query: 319 GFGVTTNAGSIMPNQYLSRV-NLEVIDNSMCSWAFPGILQPTNLCTSGVGGVGTCRGD 149
GFG A + +++ V NL+V D P ++QP N C S +GD
Sbjct: 361 GFGEAFKAETCSVRTFVNHVENLDVNDLKQLKSGHPPLVQPENYCLSDSDSESDGQGD 418
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 12 LKKSMNEVTRA*AAGKPISQPKPEPNDVIPIKIRRLFLVITRGPPESPRQVPTPP 176
L SM ++ R A KP S P P P+ P K +RGPP P + +PP
Sbjct: 126 LLSSMLDIPRRNLATKPGSSPSPSPSR--PPKR-------SRGPPRPPTRPKSPP 171
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 12 LKKSMNEVTRA*AAGKPISQPKPEPNDVIPIKIRRLFLVITRGPPESPRQVPTPP 176
L SM ++ R A KP S P P P+ P K +RGPP P + +PP
Sbjct: 126 LLSSMLDIPRRNLATKPGSSPSPSPSR--PPKR-------SRGPPRPPTRPKSPP 171
>At2g47960.1 68415.m05999 expressed protein
Length = 442
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 448 YRNDVAVIHLTSPVGLSNIIGTASLPTGEELQENFVGYIAV 326
YRN + H T P+GLS ++ L E F YI+V
Sbjct: 71 YRNRFLLNHPTDPIGLSGLLLLPQSFGAIYLGETFCSYISV 111
>At4g00540.2 68417.m00075 myb family transcription factor
Length = 401
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +2
Query: 497 PGASGKECHRSKNNRYEPTLID---TIEPAVSSCQ-QSGRGNK 613
PG GK+C +N PT+I T E + Q Q G GNK
Sbjct: 135 PGRIGKQCRERWHNHLNPTIIKSPWTREEELILVQAQRGNGNK 177
>At4g00540.1 68417.m00074 myb family transcription factor
Length = 437
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +2
Query: 497 PGASGKECHRSKNNRYEPTLID---TIEPAVSSCQ-QSGRGNK 613
PG GK+C +N PT+I T E + Q Q G GNK
Sbjct: 135 PGRIGKQCRERWHNHLNPTIIKSPWTREEELILVQAQRGNGNK 177
>At1g70480.1 68414.m08109 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220
Length = 320
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 247 IDNSMCSWAFPGILQPTNLCTSGVGGVGT 161
+D MC P L+ N CT G G +G+
Sbjct: 206 VDEHMCDRLKPKTLEEYNRCTGGKGRIGS 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,290
Number of Sequences: 28952
Number of extensions: 413999
Number of successful extensions: 1397
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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