Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f20f
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 29 0.28
SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa... 27 2.0
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 2.7
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 26 3.5
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 3.5
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 25 4.6
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 25 6.1
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 25 8.1
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 25 8.1
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 8.1
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 29.5 bits (63), Expect = 0.28
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = -1
Query: 308 AAVNSLVGVTSVAPQTPTFTLLTMATIRPAW*GNSPRL-AGEPPTILVSLRPASSAVRIL 132
AA G+T+ A P T T T A +P AG P S+ AS A
Sbjct: 1034 AAPAGFGGITNTATNNPPSTGFTF-TPSNAGSTAAPMFGAGNTPNPSGSINNASQAFAFG 1092
Query: 131 SASGTPYLVRYP*SGFSSRGSAATVAYASRNKKPAPN 21
S + P +GFS + + AS ++ PAPN
Sbjct: 1093 SGEPSNPASNPPSTGFSFGAATPSAFNASASQSPAPN 1129
>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 26.6 bits (56), Expect = 2.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 462 DSNIVAVKNREPVGVQYNRTSVNPGASGKECHR 364
D+N VK E G+Q+NR VN SGK R
Sbjct: 14 DNNRFLVKRPEFGGIQFNREPVN--VSGKNAQR 44
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 375 ECHRSKNNRYEPTLIDTIEPAVSSCQQS 292
E H+S N + TL+ +EP ++ +QS
Sbjct: 254 EKHKSDNKKTFGTLVSFVEPTITGSEQS 281
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 288 YQTVDSCSLLVRWYQSRLAHNGCSWIG 368
Y +++SC +L+ Y S NGC G
Sbjct: 263 YPSIESCIILLMAYTSYFFSNGCHMSG 289
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -1
Query: 230 IRPAW*GNSPRLAGEPPTILV---SLRPASSAVR 138
I P + N+PR++ EPP + + SL+P S ++
Sbjct: 185 IVPQYSENNPRVSNEPPRVTIENASLKPFSGYIK 218
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 370 SPIQEQPL*ANLD*YHRTSSEQLSTVW*G*QASLRRHPRLH 248
SP+Q+ P+ A ++ +SE ++++W S + P LH
Sbjct: 155 SPLQDLPIVAKTKLHNCPNSEPVTSIWNQRSLSSGKPPSLH 195
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 340 WLITVVLGSVTLFTGGTRVDTSSVI 414
W + V L ++T+ GTR++T I
Sbjct: 377 WFVRVYLHTLTITLNGTRINTKDFI 401
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 24.6 bits (51), Expect = 8.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 209 NSPRLAGEPPTILVSLRPASSAVRILSASGTP 114
N+ R+ G PTI +L AV ++S G P
Sbjct: 36 NNARIVGALPTIKYALEQQPKAVILMSHLGRP 67
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 282 NKRRSADTHVYIIDDGDDQTGLVREFSKTSRRATNDS 172
N+ R AD ++D+ D+ L+ F+ NDS
Sbjct: 227 NRYRKADASAAVVDEHSDEEALLCAFTDHPHFYLNDS 263
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 267 ADTHVYIIDDGDDQTGLVREFSKTSRRATNDSG 169
A T+V+ DGDD+ + E+ + ++D G
Sbjct: 103 ASTNVFYESDGDDEEFVNEEYENSIDEESDDEG 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,973
Number of Sequences: 5004
Number of extensions: 41579
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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