Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f20f
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0352 - 4619946-4619984,4620062-4620133,4621515-4621880,462... 30 1.1
10_08_1027 - 22404169-22404807,22406148-22406360,22407062-224072... 29 2.0
06_01_0603 - 4350124-4350590,4350995-4353608 28 3.5
05_04_0281 + 19779156-19779805,19781303-19781475,19781909-197821... 28 3.5
03_01_0471 + 3629158-3629185,3630027-3630058,3630272-3630344,363... 28 4.6
01_06_1493 + 37753816-37755558 28 4.6
01_06_1490 - 37732724-37735020,37735803-37735980 28 4.6
09_02_0310 - 7162798-7163187 27 6.1
07_01_0635 + 4753919-4754090,4754200-4754258,4754377-4754432,475... 27 6.1
04_01_0179 + 2021977-2024890,2025117-2025610 27 6.1
05_07_0095 - 27659944-27660795,27660900-27661172,27661280-276613... 27 8.1
05_03_0316 + 12242823-12242964,12243032-12243282,12243370-122435... 27 8.1
03_02_0287 + 7104144-7106069 27 8.1
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 27 8.1
>04_01_0352 -
4619946-4619984,4620062-4620133,4621515-4621880,
4622240-4622713
Length = 316
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 396 NPGASGKECHRSKNNRYEPTLIDTIEPAVSSCQQSGRGNKR 274
+P A+ +ECHR + RY P E +S +G G KR
Sbjct: 17 HPPAAAQECHRLRRRRYVPAAAAASEDGDNS--SNGGGEKR 55
>10_08_1027 -
22404169-22404807,22406148-22406360,22407062-22407255,
22407422-22407566,22407801-22407875,22408222-22408380,
22408466-22408645,22408756-22409243,22409375-22409738,
22409811-22409943,22410023-22410153,22410247-22410354,
22410451-22410897,22411425-22411514,22411607-22411915,
22412209-22412320,22412488-22412699
Length = 1332
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 7 VMMKTFGAGFLFLLAYATVAALPLDENPLYGYLTKYGVPEAERIRTAEEAGLRDT 171
++ K G+LF +A A P DEN YG+ A +I + GL +T
Sbjct: 542 IVSKPLSVGYLFSVAELKSGAYPKDEN--YGFQHAMPASTATKISVIHDNGLPNT 594
>06_01_0603 - 4350124-4350590,4350995-4353608
Length = 1026
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 121 PEAERIRTAEEAGLRDTRIVGGSPASLGEFPY 216
PE R+R E L + + G P S+GE P+
Sbjct: 349 PEMSRLRRLERLYLSNNLLAGEIPRSIGEMPH 380
>05_04_0281 +
19779156-19779805,19781303-19781475,19781909-19782162,
19782265-19782339,19782431-19782538,19782914-19783031,
19783347-19783482,19785623-19785797,19786333-19786860,
19787624-19787836,19787850-19787882
Length = 820
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 426 LVPGSLPQRCCCHPSDESCW 485
LV +LP R CCHP + W
Sbjct: 764 LVTKALPHRQCCHPETSARW 783
>03_01_0471 +
3629158-3629185,3630027-3630058,3630272-3630344,
3630745-3630969,3631319-3631789,3632286-3633118
Length = 553
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 269 PQTPTFTLLTMATIRPAW*GNSPRLAGEPPTILVSLRPASSAV-RILSASGTP 114
P + T LL+ A P+ + P +S RP+S ++ RI +ASGTP
Sbjct: 309 PASETTPLLSSAVRLPSQSSSFRSSVAASPPRPISRRPSSQSISRIYAASGTP 361
>01_06_1493 + 37753816-37755558
Length = 580
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 249 CKRGCLRSDACYPYQTVDSCSL 314
C++ CLRS +C Y SCSL
Sbjct: 157 CEQACLRSCSCTAYSYNGSCSL 178
>01_06_1490 - 37732724-37735020,37735803-37735980
Length = 824
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 249 CKRGCLRSDACYPYQTVDSCSL 314
C++ CLRS +C Y SCSL
Sbjct: 388 CEQACLRSCSCTAYSYNGSCSL 409
>09_02_0310 - 7162798-7163187
Length = 129
Score = 27.5 bits (58), Expect = 6.1
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = -3
Query: 459 SNIVAVKNREPVGVQYNRTSVNPGASGKECHRSKNNRYEPTLIDTIEPAVSSCQQSGRGN 280
S I A EP V V G S C+R + R P+L+ I P +S+
Sbjct: 37 SRIAAAACSEPSRVD----GVEDGCSRASCYRWQRRRRLPSLLPWIGPMISATAV----- 87
Query: 279 KRRSADTHVYIIDDGDDQTGLVREFSKTSRR 187
+ + ++DDG +G R++ + +R
Sbjct: 88 ---APEAFTEVVDDGGSDSGGRRQWWRERKR 115
>07_01_0635 +
4753919-4754090,4754200-4754258,4754377-4754432,
4754698-4754842,4755506-4755580,4755844-4755933,
4756218-4756295,4757879-4758376,4758512-4758997
Length = 552
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 198 TSRRATNDSGIPQTRFFSCANPLCFWYTIFSEVSIKWIF 82
TSRRA + IP++ F + N L F Y + +I F
Sbjct: 73 TSRRALRSAKIPESEFTTLPNGLKFCYRVTGRQTILCYF 111
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 118 VPEA-ERIRTAEEAGLRDTRIVGGSPASLG 204
+PE+ R+ GL DT+I G PASLG
Sbjct: 201 IPESFSRLSNLVVLGLADTKISGALPASLG 230
>05_07_0095 -
27659944-27660795,27660900-27661172,27661280-27661354,
27661683-27661837,27661935-27662051,27662148-27662487
Length = 603
Score = 27.1 bits (57), Expect = 8.1
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +3
Query: 126 SREDSHS*RSGSEGYQNRWWLSC*SWRIPLPGRSDRRHRQ*CKRGCLRSDACYPYQTVDS 305
S++ S S + + +RWWL + R+P G SD + + L + +++
Sbjct: 245 SKDASESEKGNTPRQDDRWWLP--TVRVPPGGLSDASRKWVQHQKDLVNQVLKAAMAINA 302
Query: 306 CSLL----VRWYQSRLAHNGCSWIGDTLYR 383
L+ Y L NG S +GD++Y+
Sbjct: 303 NVLMEMDVPEAYIESLPKNGKSTLGDSMYK 332
>05_03_0316 +
12242823-12242964,12243032-12243282,12243370-12243573,
12243660-12243752,12243828-12243926,12244006-12244308
Length = 363
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -3
Query: 420 VQYNRTSVNPGASGKECHRSKNNRY--EPTLIDTIEPAVSSCQQSGRGNKRRSADTHVYI 247
++++R V+ ECH++K+ RY + T E + ++ G + AD +
Sbjct: 230 LEHDRVEVDRATFFDECHKTKDGRYVNDATQDKMNEVYMKLAEKRVDGQELTEADFEQAM 289
Query: 246 ID-DGDDQTGLVREFSKT 196
++ G D +G VR T
Sbjct: 290 LEVFGKDHSGRVRGMGPT 307
>03_02_0287 + 7104144-7106069
Length = 641
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 284 VTSVAPQTPTFTLLTMATIRPAW*GNSPRLAGEPPTILVSLRPASSAVRILSASGTP 114
V+S + PTF++ T + + A PRL G+P SL PA+ A+ + + P
Sbjct: 8 VSSGFTKAPTFSVTTASQLHDAIDRLLPRLRGDP-----SLAPAARALAAAATASLP 59
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 279 KRRSADTHVYIIDDGDDQTG 220
KRR AD V +DD DD TG
Sbjct: 704 KRRPADMPVDYLDDDDDNTG 723
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,939
Number of Sequences: 37544
Number of extensions: 310306
Number of successful extensions: 981
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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