BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12f20f (488 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 29 1.4 Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 28 3.2 AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 28 4.2 AC025726-9|AAK73924.1| 594|Caenorhabditis elegans Hypothetical ... 28 4.2 Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical p... 27 5.5 AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. 27 5.5 Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr... 27 9.7 Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr... 27 9.7 >U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like protease protein 1 protein. Length = 293 Score = 29.5 bits (63), Expect = 1.4 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Frame = +1 Query: 124 EAERIRTAEEAG---LRDTRIVGGSPASLGEFPYQXXXXXXXXXXXXXXXXXXTLVTPTR 294 E + R+A+E D R++GGS +S P+ +L+ P Sbjct: 38 ELAQTRSAQEPADYVTLDHRLIGGSESS----PHSWPWTVQLLSRLGHHRCGGSLIDPNF 93 Query: 295 LLTAAHCWFDGINQGWLITVVLGSVTLFTGGTRVDTSSVILHPDWFPVLYRN--DVAVIH 468 +LTAAHC F + +V +G +G ++V +HP W+ + + + D A++ Sbjct: 94 VLTAAHC-FAKDRRPTSYSVRVGGHRSGSGSPH-RVTAVSIHP-WYNIGFPSSYDFAIMR 150 Query: 469 LTSPV 483 + PV Sbjct: 151 IHPPV 155 >Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical protein F15B9.5 protein. Length = 297 Score = 28.3 bits (60), Expect = 3.2 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 277 LVTPTRLLTAAHCWFDGINQGWLITVVLGSVTL 375 L+ P+ ++T+AHC F G + V LG V L Sbjct: 50 LIAPSIVITSAHCVFSGDDFAVTAKVTLGDVHL 82 >AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical protein W05F2.7 protein. Length = 1424 Score = 27.9 bits (59), Expect = 4.2 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 2/110 (1%) Frame = -1 Query: 437 TGNQSGCSITELV--STLVPPVKSVTDPRTTVMSQP*LIPSNQQ*AAVNSLVGVTSVAPQ 264 T +G ++T LV ST+V P+ T + S + PS Q A GVT P Sbjct: 609 TMGSTGMTLTTLVAGSTVVTPMTEATGAFLSAGSTA-MTPSTQGTGAT----GVTMSTPG 663 Query: 263 TPTFTLLTMATIRPAW*GNSPRLAGEPPTILVSLRPASSAVRILSASGTP 114 T M W N+P + PT + P + ++ TP Sbjct: 664 TMATGTTPMTPTVSVWGTNTPAVTPASPTTIRLADPGAVTPGLILPVTTP 713 >AC025726-9|AAK73924.1| 594|Caenorhabditis elegans Hypothetical protein Y71G12B.23a protein. Length = 594 Score = 27.9 bits (59), Expect = 4.2 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +1 Query: 289 TRLLTAAHCWFDGINQGWLITV--VLGSVTLFTGGTRVDTSSVILH 420 T LT HC G+N W+I V +LG + + R T IL+ Sbjct: 468 TPWLTLRHCGLPGLNLKWMIWVFAILGILYQYNFHERYKTLETILY 513 >Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical protein T09A5.10 protein. Length = 821 Score = 27.5 bits (58), Expect = 5.5 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +1 Query: 130 ERIRTAEEAGLRDTRIVGGSPASLGEF 210 ERI+ ++A +R +RI GSP SL +F Sbjct: 640 ERIKIFQQAPMRGSRIRCGSPDSLPDF 666 >AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. Length = 821 Score = 27.5 bits (58), Expect = 5.5 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +1 Query: 130 ERIRTAEEAGLRDTRIVGGSPASLGEF 210 ERI+ ++A +R +RI GSP SL +F Sbjct: 640 ERIKIFQQAPMRGSRIRCGSPDSLPDF 666 >Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical protein H40L08.3 protein. Length = 1026 Score = 26.6 bits (56), Expect = 9.7 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -3 Query: 273 RSADTHVYIIDDGDDQTGLVREFSKTSRRATNDSGIPQTRFFS 145 R+ D+ + +DD TGL FSK + R S +P FF+ Sbjct: 436 RATDSTIITLDD----TGLFVVFSKLTNRVLCSSRVPDAFFFT 474 >Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical protein H40L08.3 protein. Length = 1026 Score = 26.6 bits (56), Expect = 9.7 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -3 Query: 273 RSADTHVYIIDDGDDQTGLVREFSKTSRRATNDSGIPQTRFFS 145 R+ D+ + +DD TGL FSK + R S +P FF+ Sbjct: 436 RATDSTIITLDD----TGLFVVFSKLTNRVLCSSRVPDAFFFT 474 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,604,827 Number of Sequences: 27780 Number of extensions: 245607 Number of successful extensions: 660 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 615 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 657 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 914086948 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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