Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f20f
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    29   1.4  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    28   4.2  
AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z36753-17|CAA85342.1|  821|Caenorhabditis elegans Hypothetical p...    27   5.5  
AF240692-1|AAF61239.1|  821|Caenorhabditis elegans LIN-5 protein.      27   5.5  
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
 Frame = +1

Query: 124 EAERIRTAEEAG---LRDTRIVGGSPASLGEFPYQXXXXXXXXXXXXXXXXXXTLVTPTR 294
           E  + R+A+E       D R++GGS +S    P+                   +L+ P  
Sbjct: 38  ELAQTRSAQEPADYVTLDHRLIGGSESS----PHSWPWTVQLLSRLGHHRCGGSLIDPNF 93

Query: 295 LLTAAHCWFDGINQGWLITVVLGSVTLFTGGTRVDTSSVILHPDWFPVLYRN--DVAVIH 468
           +LTAAHC F    +    +V +G     +G      ++V +HP W+ + + +  D A++ 
Sbjct: 94  VLTAAHC-FAKDRRPTSYSVRVGGHRSGSGSPH-RVTAVSIHP-WYNIGFPSSYDFAIMR 150

Query: 469 LTSPV 483
           +  PV
Sbjct: 151 IHPPV 155


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 277 LVTPTRLLTAAHCWFDGINQGWLITVVLGSVTL 375
           L+ P+ ++T+AHC F G +      V LG V L
Sbjct: 50  LIAPSIVITSAHCVFSGDDFAVTAKVTLGDVHL 82


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 2/110 (1%)
 Frame = -1

Query: 437 TGNQSGCSITELV--STLVPPVKSVTDPRTTVMSQP*LIPSNQQ*AAVNSLVGVTSVAPQ 264
           T   +G ++T LV  ST+V P+   T    +  S   + PS Q   A     GVT   P 
Sbjct: 609 TMGSTGMTLTTLVAGSTVVTPMTEATGAFLSAGSTA-MTPSTQGTGAT----GVTMSTPG 663

Query: 263 TPTFTLLTMATIRPAW*GNSPRLAGEPPTILVSLRPASSAVRILSASGTP 114
           T       M      W  N+P +    PT +    P +    ++    TP
Sbjct: 664 TMATGTTPMTPTVSVWGTNTPAVTPASPTTIRLADPGAVTPGLILPVTTP 713


>AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23a protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 289 TRLLTAAHCWFDGINQGWLITV--VLGSVTLFTGGTRVDTSSVILH 420
           T  LT  HC   G+N  W+I V  +LG +  +    R  T   IL+
Sbjct: 468 TPWLTLRHCGLPGLNLKWMIWVFAILGILYQYNFHERYKTLETILY 513


>Z36753-17|CAA85342.1|  821|Caenorhabditis elegans Hypothetical
           protein T09A5.10 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 130 ERIRTAEEAGLRDTRIVGGSPASLGEF 210
           ERI+  ++A +R +RI  GSP SL +F
Sbjct: 640 ERIKIFQQAPMRGSRIRCGSPDSLPDF 666


>AF240692-1|AAF61239.1|  821|Caenorhabditis elegans LIN-5 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 130 ERIRTAEEAGLRDTRIVGGSPASLGEF 210
           ERI+  ++A +R +RI  GSP SL +F
Sbjct: 640 ERIKIFQQAPMRGSRIRCGSPDSLPDF 666


>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 273 RSADTHVYIIDDGDDQTGLVREFSKTSRRATNDSGIPQTRFFS 145
           R+ D+ +  +DD    TGL   FSK + R    S +P   FF+
Sbjct: 436 RATDSTIITLDD----TGLFVVFSKLTNRVLCSSRVPDAFFFT 474


>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 273 RSADTHVYIIDDGDDQTGLVREFSKTSRRATNDSGIPQTRFFS 145
           R+ D+ +  +DD    TGL   FSK + R    S +P   FF+
Sbjct: 436 RATDSTIITLDD----TGLFVVFSKLTNRVLCSSRVPDAFFFT 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,604,827
Number of Sequences: 27780
Number of extensions: 245607
Number of successful extensions: 660
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)