Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f20f
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52910.1 68418.m06566 timeless family protein contains Pfam d...    29   1.7  
At3g06620.1 68416.m00769 protein kinase family protein contains ...    29   2.2  
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept...    28   3.9  
At4g00540.2 68417.m00075 myb family transcription factor               27   5.1  
At4g00540.1 68417.m00074 myb family transcription factor               27   5.1  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    27   6.8  
At1g49920.1 68414.m05598 zinc finger protein-related weak simila...    27   6.8  

>At5g52910.1 68418.m06566 timeless family protein contains Pfam
            domains PF05029: Timeless protein C terminal region and
            PF04821: Timeless protein
          Length = 1141

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
 Frame = -3

Query: 471  QMDDSNIVAVKNREPVGVQYNRT---SVN---PGASGKECHRSKNNRYEPTLIDTIEPAV 310
            + +D  ++A KNR+    Q N+    S+N   PG S     R++ + +EPT  +      
Sbjct: 1005 ESEDETLLAFKNRKSRKNQKNKQQTGSINEITPGGSEDNTERNETSLHEPTAGEE----- 1059

Query: 309  SSCQQSGRGNKRRSADTHVYIIDDG 235
                QS    + R ++T V+I D+G
Sbjct: 1060 EDNDQSYITRESRQSETDVHISDNG 1084


>At3g06620.1 68416.m00769 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 773

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -3

Query: 465 DDSNIVAVKNREPVGVQYNRTSVNPGASGKECHRSKNNRYEPTLIDTIEPAVSSCQQSGR 286
           D ++ V+ K R  +    N  +++ G SG + H+  +N +  TL+D  + A SS   + R
Sbjct: 278 DLASKVSNKVRSKMRAGDNSATLSEGGSG-DSHQKDHNVFGATLVDHRDDAASSGASTPR 336

Query: 285 GN 280
           G+
Sbjct: 337 GD 338


>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative contains
           Pfam profile: PF00254, FKBP-type peptidyl-prolyl
           cis-trans isomerases
          Length = 694

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = -3

Query: 369 HRSKNNRYEPTLIDT-IEPAVSSCQQSGRGNKRRSADTHVYIIDDGDDQTGLVREFSKTS 193
           H++ +NR +  L D  + P    C+   +  + +       II D DD  G     S  +
Sbjct: 454 HKTLDNREDKPLDDAKLSPVQKDCEILSKKKRNKERSKSSAIIIDSDDGEGKNMPESLQN 513

Query: 192 RRATNDSGI 166
               +D GI
Sbjct: 514 ENPVSDKGI 522


>At4g00540.2 68417.m00075 myb family transcription factor
          Length = 401

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -3

Query: 393 PGASGKECHRSKNNRYEPTLID---TIEPAVSSCQ-QSGRGNK 277
           PG  GK+C    +N   PT+I    T E  +   Q Q G GNK
Sbjct: 135 PGRIGKQCRERWHNHLNPTIIKSPWTREEELILVQAQRGNGNK 177


>At4g00540.1 68417.m00074 myb family transcription factor
          Length = 437

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -3

Query: 393 PGASGKECHRSKNNRYEPTLID---TIEPAVSSCQ-QSGRGNK 277
           PG  GK+C    +N   PT+I    T E  +   Q Q G GNK
Sbjct: 135 PGRIGKQCRERWHNHLNPTIIKSPWTREEELILVQAQRGNGNK 177


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical
           to cDNA putative transcription factor (HUA2) GI:4868119;
           contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 324 IEPAVSSCQQSGRGNKRRSADTHVYI-IDDGDDQTGLVREFSK 199
           + P V    ++ +  +  SAD  V   IDDG D TG V +  +
Sbjct: 318 LAPRVDESSRAAKKPRCESADNKVKCEIDDGSDSTGTVSDIKR 360


>At1g49920.1 68414.m05598 zinc finger protein-related weak
           similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
           mays] GI:1857256; contains Pfam profiles PF03108: MuDR
           family transposase, PF04434: SWIM zinc finger
          Length = 785

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 342 PTLID-TIEPAVSSCQQSGRGNKRRSADTHVYIIDDGDD 229
           PTLI   IEP       SG+G ++ + D H+   +DGDD
Sbjct: 722 PTLIPPVIEPPPPKV--SGKGKEKDTEDDHLEEDEDGDD 758


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,051,663
Number of Sequences: 28952
Number of extensions: 229934
Number of successful extensions: 598
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)