Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f19r
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15090.1 68418.m01768 porin, putative / voltage-dependent ani...    63   2e-10
At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34...    61   8e-10
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    48   5e-06
At5g37610.1 68418.m04530 hypothetical protein                          41   7e-04
At3g20000.1 68416.m02530 porin family protein low similarity to ...    36   0.020
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    35   0.046
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ...    28   5.3  
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c...    28   5.3  
At2g27770.1 68415.m03365 expressed protein                             28   5.3  
At1g05080.1 68414.m00510 F-box family protein contains F-box dom...    28   5.3  
At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing...    27   9.3  

>At5g15090.1 68418.m01768 porin, putative / voltage-dependent
           anion-selective channel protein, putative similar to
           SP|P42055 34 kDa outer mitochondrial membrane protein
           porin (Voltage-dependent anion-selective channel
           protein) (VDAC) {Solanum tuberosum}; contains Pfam
           profile PF01459: Eukaryotic porin; identical to cDNA
           voltage-dependent anion-selective channel protein
           GI:4006940
          Length = 274

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 1/149 (0%)
 Frame = -1

Query: 712 PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNV-DNGKDFGGSI 536
           P+V+ + V+   G   G    ++T+   F   N    +   D      + D G+    S 
Sbjct: 127 PIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASY 186

Query: 535 YQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPG 356
           YQ VS     G  +     + +    VG ++ALD   ++ A++NN  +     Q + RP 
Sbjct: 187 YQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPK 246

Query: 355 VTLTLSAAIDGQNFNAGGHKVGVALELEP 269
              T+S  +D +  +    KVG+AL L+P
Sbjct: 247 SFFTVSGEVDSKAIDKSA-KVGIALALKP 274


>At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
 Frame = -1

Query: 712 PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNV-DNGKDFGGSI 536
           P V+ + V+       G    FDT+   F+K N  L +   D      V D G     S 
Sbjct: 127 PTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASY 186

Query: 535 YQKVSDKLD--CGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLR 362
           Y  V+   +   G  +     S D+   VG +++LD   S+ A++N+  +     Q + +
Sbjct: 187 YHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWK 246

Query: 361 PGVTLTLSAAIDGQNFNAGGHKVGVALELEP 269
           P    T+S  +D ++ +    KVG+AL L+P
Sbjct: 247 PKSFFTISGEVDTKSIDKSA-KVGLALALKP 276


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 3/151 (1%)
 Frame = -1

Query: 712 PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNV-DNGKDFGGSI 536
           P++D+ A L       G    +DT    F+K N  +     D  L   + D G     S 
Sbjct: 127 PLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGDSLKASY 186

Query: 535 YQKVSD-KLDCGVSMKWTAGSA-DTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLR 362
                + K    V   +   S  +    VG  YA+D   ++ AK+NN   +G   Q ++ 
Sbjct: 187 LHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGALLQHEVL 246

Query: 361 PGVTLTLSAAIDGQNFNAGGHKVGVALELEP 269
           P   +T+S+ ID +       + G++L L+P
Sbjct: 247 PRSLVTVSSEIDTKALEK-HPRFGLSLALKP 276


>At5g37610.1 68418.m04530 hypothetical protein
          Length = 163

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 2/148 (1%)
 Frame = -1

Query: 712 PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSI 536
           P++  +AV     W  G     D      +K N  L   + D     ++D     F  S 
Sbjct: 18  PILSFSAVFGNDFWRFGFELTLDLVNRIITKANTVLSLITEDTTTTFSIDKKASLFTASY 77

Query: 535 YQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPG 356
           YQ++  K  CG   K+        F +G ++    D  + A ++  +  G   +   +  
Sbjct: 78  YQRLHSKTVCGAEAKYILSDKSNSFSIGKRHLFGDDDLIQALLSVSN--GGSMRVLFQHH 135

Query: 355 VTLTLSAAIDGQN-FNAGGHKVGVALEL 275
            TL     I G+   N    + G+A+EL
Sbjct: 136 WTLKSFFTIAGERLLNHSSQRFGLAVEL 163


>At3g20000.1 68416.m02530 porin family protein low similarity to
           haymaker protein [Mus musculus] GI:17834089,
           mitochondrial outer membrane protein MOM35 [Mus
           musculus] GI:6650562; contains Pfam profile PF01459:
           Eukaryotic porin
          Length = 309

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = -1

Query: 532 QKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGV 353
           QK+SDK+       +   S D    VG  Y L Q A +  KI++  +     +++L  G+
Sbjct: 227 QKISDKVSLATDFMYNYFSRDVTASVGYDYMLRQ-ARVRGKIDSNGVASALLEERLSMGL 285

Query: 352 TLTLSAAID 326
              LSA +D
Sbjct: 286 NFLLSAELD 294


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 35.1 bits (77), Expect = 0.046
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
 Frame = -1

Query: 655 TQFDTQKAKFSKNNFALGYQSGDFALHTNV-DNGKDFGGSI--YQKVSDKLDCGVSMKWT 485
           T +DT    F+K N  +     D  +   + D G     S   Y   S +      +   
Sbjct: 96  TGYDTTSRTFTKYNVGVSVTKPDQCVSIILGDKGDSIKASYVYYLDESTRSATVGEVIRK 155

Query: 484 AGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAG 305
             + +T   VG  YA+D   ++ AK+N+    G   Q +  P   +T+S  ID +  +  
Sbjct: 156 ISTNETTVTVGGLYAVDHLTNVKAKLNSNGKFGALLQHEGLPKSIVTISGEIDTKTLDK- 214

Query: 304 GHKVGVALELEP 269
             ++G++L L+P
Sbjct: 215 YPRLGLSLSLKP 226


>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
           protein (ETT) identical to ETTIN GB:AF007788 from
           [Arabidopsis thaliana]
          Length = 608

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 429 TRLCTPRSTTSPSSVLVTNRN 367
           TR+  P  ++SPSSVL+TN N
Sbjct: 514 TRILPPSVSSSPSSVLLTNSN 534


>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 610

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 281 RTRALENITKPTLVDKYILLSQPNSVYRESISIVEIT 171
           RT+ LE  T  T  DKY+  S PN +    +++ +++
Sbjct: 207 RTKELERATGDTTKDKYLPKSSPNRLKAMEVALYKVS 243


>At2g27770.1 68415.m03365 expressed protein
          Length = 320

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 135 LSCFPKNAVRLFH*LFLNVCKQFASKYSLTRLLINKS 25
           +SCF +N++ + H L ++      SKYS   + I+ S
Sbjct: 5   VSCFSENSINVTHPLSISSSSSSCSKYSTNNVCISPS 41


>At1g05080.1 68414.m00510 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 439

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/48 (33%), Positives = 32/48 (66%)
 Frame = -3

Query: 263 NITKPTLVDKYILLSQPNSVYRESISIVEITCIVPGAFKTQYSFPAFL 120
           ++++ TL D+ IL++ P+S Y  S++ +E+ C+V   +K + S  +FL
Sbjct: 141 SLSELTLSDQ-ILVNVPSSAYLPSLTELELICVV---YKDEDSLVSFL 184


>At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing
           protein similar to SP|O00623 Peroxisome assembly protein
           12 (Peroxin-12) (Peroxisome assembly factor-3) (PAF-3)
           {Homo sapiens}; contains Pfam profile PF04757: Pex2 /
           Pex12 amino terminal region
          Length = 393

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 231 VFIYKSRFGYIF*GSSSRATPTLWPPALKF-CPSMAADNVRVTPGRSFC 374
           VFI+K    +        + PT++PP      P MA + + + P RS C
Sbjct: 291 VFIFKMMEWWYQSAEERLSAPTVYPPPPPPPAPKMAKEGIPLPPDRSLC 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,324,223
Number of Sequences: 28952
Number of extensions: 365637
Number of successful extensions: 950
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)