Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f17r
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0153 + 14159820-14162417                                         30   1.5  
07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984...    30   2.0  
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    29   4.5  
07_03_1144 + 24331104-24331292,24331387-24331611,24332133-243325...    28   6.0  
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    28   6.0  
02_02_0476 - 10751647-10753323                                         28   6.0  
02_02_0310 - 8842286-8843314                                           28   6.0  
08_02_0707 - 20212190-20214592                                         28   7.9  

>11_04_0153 + 14159820-14162417
          Length = 865

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 568 RVGGRIPVTPSESFQKRISGASEKDIVHSGL 476
           R+GG I   P ESFQ+R    ++ D+   G+
Sbjct: 309 RIGGTIGYLPPESFQRRAMATAKSDVFSFGI 339


>07_03_0739 -
           21096684-21096742,21096822-21097076,21097206-21098498,
           21098616-21098688
          Length = 559

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = -2

Query: 661 VSYGRLTFKYERESNYHLLESVQESLERR-FGRVGGRIPVTPSESFQKRISGASEKDIVH 485
           V+Y  L F  E ++ Y+ +  V  S ER    + GGR+P+  SE      SG      + 
Sbjct: 237 VTYYSL-FDAELDAVYYAINKVSGSNERASLAQAGGRVPIRVSE------SGHPSGGRIR 289

Query: 484 SGL-DYTMERSARAIMKTAMRFNLGLDLRTAAYANSIEKI 368
           SG+ +   +  + A    A  +N GL  R    A+++E +
Sbjct: 290 SGVTEANADGDSVATKANAQAYNNGLAKRVLFGASNMEDV 329


>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
            87962-88042,88133-88237,88338-88568,88665-90197,
            90660-90752,91477-92887,93184-93305,93479-93718,
            94521-94682,94770-94937,95025-95141,95266-95376,
            95919-96506
          Length = 1787

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +2

Query: 416  EVEPHGCLHDGPSGSLHGVVESGVHDVLLGGAGDS 520
            E + H  L DG   SL   V+ GVHDV LG   DS
Sbjct: 999  EEDDHEVLQDG---SLPICVQDGVHDVKLGDTDDS 1030


>07_03_1144 +
           24331104-24331292,24331387-24331611,24332133-24332521,
           24332762-24332856,24333300-24333673
          Length = 423

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +2

Query: 314 YSVSELLE----S*TGIGIRGEYLFDGVRIRGCPQI*TEVEP-HGCLHDGPSGS 460
           Y V E LE    S  G   R +   DG R+R C  + T  EP  G +H   S S
Sbjct: 292 YGVEETLEAHSDSTAGFTDRHQKRSDGGRVRACAAVATGAEPVQGVVHSSSSSS 345


>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 483 PDSTTPWRDPLGPS*RQP 430
           P  +TPWRDP   S RQP
Sbjct: 10  PHDSTPWRDPSRASSRQP 27


>02_02_0476 - 10751647-10753323
          Length = 558

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 488 HDVLLGGAGDSLLEGL*GSDGDAASHATEPPL 583
           H+V+  G G  L+    G    AA+ ATEPP+
Sbjct: 313 HEVMFTGLGGGLVVSDNGEHASAAAPATEPPV 344


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = -1

Query: 524 EENLRRLREGHRALRTR-LHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHH 360
           E+ + RL  G R+      HH      + ED HE          R+   HR+  HH
Sbjct: 174 EDEMARLHHGRRSHHHHHRHHHHHHDENEEDEHEQADEASPAVERLISFHRRRHHH 229


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 470 HHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHHVC 354
           HHG+    HH D H       S  + + E   K+ H  C
Sbjct: 542 HHGDANKSHHHDHHHDSSNEESHHNSLTENSCKENHSHC 580


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,759,058
Number of Sequences: 37544
Number of extensions: 378429
Number of successful extensions: 880
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)