Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f17r
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)            174   5e-44
SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)                       31   0.66 
SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10)        31   1.1  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3)                    29   4.6  
SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)                     28   6.1  
SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_37988| Best HMM Match : Rho_N (HMM E-Value=0.0007)                  28   8.1  
SB_29837| Best HMM Match : MobC (HMM E-Value=6.8)                      28   8.1  
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.1  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score =  174 bits (424), Expect = 5e-44
 Identities = 80/116 (68%), Positives = 100/116 (86%)
 Frame = -2

Query: 682 WLKDLNHVSYGRLTFKYERESNYHLLESVQESLERRFGRVGGRIPVTPSESFQKRISGAS 503
           WLK++NHVS+GRLT+KYE+ESNYHLLESVQ+SLER FG     IP+TPSE+FQ++ISGAS
Sbjct: 405 WLKNINHVSFGRLTWKYEKESNYHLLESVQKSLERHFGG-SSHIPITPSEAFQEQISGAS 463

Query: 502 EKDIVHSGLDYTMERSARAIMKTAMRFNLGLDLRTAAYANSIEKIFTTYADAGLAF 335
           E+DIVHSGL++TMERSA+ IM+ A  +NLGLD+RTAAY  +IEK++ TYA AG  F
Sbjct: 464 ERDIVHSGLEFTMERSAKQIMRCAEEYNLGLDIRTAAYIVAIEKVYNTYAVAGFTF 519


>SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)
          Length = 410

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 124 FTYKRHCNHSIFLCVEIMAFYLNLSETLLN 35
           FT   H   S F+C++I+ FY ++S+ LLN
Sbjct: 70  FTSTEHKTASNFICLDIVEFYPSISQELLN 99


>SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10)
          Length = 262

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 396 PRMRTPSKRYSPRMPMPV*LSNNSLTEYQF*SIVCIVFSEE 274
           P+ RTP KR     P P  LSN   T+  + +++  +  EE
Sbjct: 103 PKKRTPEKRIQKSDPSPGILSNEDFTDLDYNTMMASLIGEE 143


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 419  PRFRS--EDSRVCELHRKDIHHVCRCRSSFLIIHLLN 315
            P FR+  E++ VC++H    ++ C C  +F  IH  N
Sbjct: 2050 PCFRNPCENNGVCKIHPVHFNYTCNCTDTFTGIHCEN 2086


>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 124  FTYKRHCNHSIFLCVEIMAFYLNLSETLLN 35
            FT  ++   S F+C +I+ FY ++S+ LLN
Sbjct: 1131 FTSTKNKTASNFICFDIVEFYPSISQELLN 1160


>SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3)
          Length = 466

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 124 FTYKRHCNHSIFLCVEIMAFYLNLSETLLN 35
           FT  ++   S F+C +I+ FY ++S+ LLN
Sbjct: 237 FTSTKNKTASNFICFDIVEFYPSISQELLN 266


>SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)
          Length = 348

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 431 GCLHDGPSGSLHGVVESGVHDVLLGGAGDSLLEGL*GSDGDAASHATEPPLERLLDRFQQ 610
           GC  +  +G +HG  +    D   G  GD  ++   G D D  ++  +PPL  +L ++ Q
Sbjct: 168 GCDDNDDNGEIHGDTQKYTDDDSGGDDGDGGVDDGNGGDYDDDNN-DDPPLSSVLRQYYQ 226


>SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 431 GCLHDGPSGSLHGVVESGVHDVLLGGAGDSLLEGL*GSDGDAASHATEPPLERLLDRFQQ 610
           GC  +  +G +HG  +    D   G  GD  ++   G D D  ++  +PPL  +L ++ Q
Sbjct: 183 GCDDNDDNGEIHGDTQKYTDDDSGGDDGDGGVDDGNGGDYDDDNN-DDPPLSSVLRQYYQ 241


>SB_37988| Best HMM Match : Rho_N (HMM E-Value=0.0007)
          Length = 1018

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 4   DTRKIIFSHKYLTMFRLNSNKKP*FQHTKKYCD 102
           D  K +  H+ L ++ + + +KP +QH   +C+
Sbjct: 228 DKTKYVIHHETLRLYTMENIRKPNYQHRTIFCE 260


>SB_29837| Best HMM Match : MobC (HMM E-Value=6.8)
          Length = 327

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 97  SIFLCVEIMAFYLNLSETLLN 35
           S F+C +++ FY ++SE LLN
Sbjct: 127 SAFICFDVVEFYPSISEDLLN 147


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 509 RLREGHRALRTRLHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKD 369
           R R+G  + R +  H   R   HE+  + + RFR  D +  +L R+D
Sbjct: 330 RHRDGRESWREKPKH---RRRSHEEREQRRDRFRDRDEKGSDLERRD 373


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -1

Query: 548  RHSLRVLPEENLRRLREGHRALRTRLH-HGEIR*GHHEDSHEV-QPRFRSEDSRVCELHR 375
            R  LR   + +  RL + H A R RLH   E       D HEV + R R     +C    
Sbjct: 831  RKRLRDRHKASRIRLHDKHEASRNRLHDRHEASRNRLRDRHEVSRKRLRDRHKALCN-RL 889

Query: 374  KDIHHVCRCR 345
             D H V R R
Sbjct: 890  CDRHEVSRKR 899


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,697,787
Number of Sequences: 59808
Number of extensions: 436959
Number of successful extensions: 1023
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)