Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f17r
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...   157   7e-39
Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical pr...    29   4.1  
D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein su...    29   4.1  
AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase...    29   4.1  

>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score =  157 bits (381), Expect = 7e-39
 Identities = 75/116 (64%), Positives = 92/116 (79%)
 Frame = -2

Query: 682 WLKDLNHVSYGRLTFKYERESNYHLLESVQESLERRFGRVGGRIPVTPSESFQKRISGAS 503
           WLK+LNHVSYGRLTFKY+ E+N  LL SVQESL +    VG   PV P+ +F  +I+GAS
Sbjct: 423 WLKNLNHVSYGRLTFKYDEEANKMLLASVQESLSKA---VGKDCPVEPNAAFAAKIAGAS 479

Query: 502 EKDIVHSGLDYTMERSARAIMKTAMRFNLGLDLRTAAYANSIEKIFTTYADAGLAF 335
           EKDIVHSGL+YTM+RS  AI++TA ++NLGLD+RTAAYANSIEK++ TY  AG  F
Sbjct: 480 EKDIVHSGLEYTMQRSGEAIIRTAHKYNLGLDIRTAAYANSIEKVYNTYRTAGFTF 535


>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 220 TVRSRHEIKPLG*FYSYCLHFIHFDLIPVHVNFTYKRHCNHSIFL-CVEIMAFYLNLSET 44
           T   RH       FY+Y LHF+    IP+H+  TY       I +  V++    L+L+  
Sbjct: 2   TCTYRHSFLESDEFYAYSLHFLSIFQIPLHIFGTYIVLFKTPIHMERVKLSMLVLHLTFA 61

Query: 43  LLNIYVKI 20
            L++Y+ I
Sbjct: 62  WLDVYLTI 69


>Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical
            protein F31B12.1a protein.
          Length = 1898

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 205  VVISLYCKMKEINIGLNLRSTLEFLRKYYTDNTLKLVFSK*IIRKLDRHRHTW*ISFRWS 384
            V++   C   ++N G ++   L   RK   D T K   ++   R L ++ + W    RW 
Sbjct: 1786 VLVEETCDDPKLNQGQSMLQALSLARKRSNDLTPKYPNNRTTSRVLGQNENVWKAQSRWK 1845

Query: 385  SHTR 396
            S  R
Sbjct: 1846 SMGR 1849


>Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical protein
            F31B12.1a protein.
          Length = 1898

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 205  VVISLYCKMKEINIGLNLRSTLEFLRKYYTDNTLKLVFSK*IIRKLDRHRHTW*ISFRWS 384
            V++   C   ++N G ++   L   RK   D T K   ++   R L ++ + W    RW 
Sbjct: 1786 VLVEETCDDPKLNQGQSMLQALSLARKRSNDLTPKYPNNRTTSRVLGQNENVWKAQSRWK 1845

Query: 385  SHTR 396
            S  R
Sbjct: 1846 SMGR 1849


>U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical
           protein C03G5.1 protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 541 PSESFQKRISGASEKDIVHSGLDYTME 461
           P+E  Q+R+ G SE  ++ +G+D T E
Sbjct: 353 PAEQLQQRLPGISETAMIFAGVDVTKE 379


>U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical
           protein F53A9.7 protein.
          Length = 85

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 470 HHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHH 360
           HHG +   HHE+SH  +        +  E H +  HH
Sbjct: 42  HHGHVDTHHHEESHHGEHHGGHHGVQHYESHHESHHH 78


>D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein
           subunit of complex II protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 541 PSESFQKRISGASEKDIVHSGLDYTME 461
           P+E  Q+R+ G SE  ++ +G+D T E
Sbjct: 353 PAEQLQQRLPGISETAMIFAGVDVTKE 379


>AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase C
            PLC210 protein.
          Length = 1898

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 205  VVISLYCKMKEINIGLNLRSTLEFLRKYYTDNTLKLVFSK*IIRKLDRHRHTW*ISFRWS 384
            V++   C   ++N G ++   L   RK   D T K   ++   R L ++ + W    RW 
Sbjct: 1786 VLVEETCDDPKLNQGQSMLQALSLARKRSNDLTPKYPNNRTTSRVLGQNENVWKAQSRWK 1845

Query: 385  SHTR 396
            S  R
Sbjct: 1846 SMGR 1849


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,384,695
Number of Sequences: 27780
Number of extensions: 332238
Number of successful extensions: 861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)