Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f17r
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20370.1 68418.m02423 serine-rich protein-related contains so...    30   1.6  
At4g28080.1 68417.m04027 expressed protein                             29   2.9  
At1g02120.1 68414.m00138 GRAM domain-containing protein-related ...    29   3.8  
At2g32800.1 68415.m04015 protein kinase family protein contains ...    28   6.6  
At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608...    27   8.8  
At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608...    27   8.8  

>At5g20370.1 68418.m02423 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 175

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -2

Query: 532 SFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMRFNLGLDLRTAAYANSIEKIFTTYA 353
           SF +R+     K +  S    T++R+ R      +R N+GL+LR  A  NS+ KI +  A
Sbjct: 85  SFHRRLEHEKSKTLASS----TVKRNNRG--DNTIRVNVGLNLRKLALMNSLAKIGSVEA 138

Query: 352 D 350
           +
Sbjct: 139 E 139


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 205 VVISLYCKMKEINIGLNLRST---LEFLRKYYTDNTL 306
           V  + Y ++KE   G +L+S    +E  RKYYTD  L
Sbjct: 502 VTETAYQRLKESETGFHLKSPKELIEMARKYYTDTAL 538


>At1g02120.1 68414.m00138 GRAM domain-containing protein-related
           contains low similarity to PF02893: GRAM domain
          Length = 556

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 533 VLPEENLRRLREGHRALRTRLHHGE 459
           ++ E+ L+R+R+ H AL+ + HH E
Sbjct: 524 MMVEDRLQRMRQDHAALKAQFHHLE 548


>At2g32800.1 68415.m04015 protein kinase family protein contains
           dual protein kinase domains, Pfam:PF00069
          Length = 851

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 631 ERESNYHLLESVQESLERRFG--RVGGRIPVTPSESFQKRISGASEKDIVHSGL 476
           E +S+Y  + S +    R     R+GG I   P ESF+K+    ++ D+   G+
Sbjct: 281 EHDSSYDSVSSFRNHQFRVADSTRIGGTIGYLPPESFRKKTVATAKTDVFSFGV 334


>At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -1

Query: 500 EGHRALRTRLHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHHVCRCRSSFLIIHL 321
           E  R+  + + +GE R    EDSHE +P +     +  + ++   +++  C     + + 
Sbjct: 90  ESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTCNCHSFVANN 149

Query: 320 LN 315
           LN
Sbjct: 150 LN 151


>At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -1

Query: 500 EGHRALRTRLHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHHVCRCRSSFLIIHL 321
           E  R+  + + +GE R    EDSHE +P +     +  + ++   +++  C     + + 
Sbjct: 90  ESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTCNCHSFVANN 149

Query: 320 LN 315
           LN
Sbjct: 150 LN 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,496
Number of Sequences: 28952
Number of extensions: 301863
Number of successful extensions: 619
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)