Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f17f
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369...    28   6.1  
07_03_1079 - 23798005-23798760                                         27   8.0  

>02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,
            3697214-3698062,3698193-3698337,3698426-3698677,
            3698780-3699089,3699415-3699524
          Length = 962

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 338  HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDS 514
            H    F   AC ++  KLV+ L     +EE+      +L L+      LE  +PL++D+
Sbjct: 882  HGCNTFQPLACSILATKLVDSLSYDRVLEERVLASLSLLNLVRH-PECLEKLYPLKKDT 939


>07_03_1079 - 23798005-23798760
          Length = 251

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 452 EYRLLSFSSLQWVSLTSNLQQACLRQLDRLGGKNILPCGRT 330
           E RLL+ +SL+  +  +   QA    ++R G +N+  CG +
Sbjct: 112 ELRLLARNSLRGSARLAGALQALRATIERFGSENVCLCGHS 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,839,474
Number of Sequences: 37544
Number of extensions: 317388
Number of successful extensions: 724
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)