Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f17f
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    29   1.7  
At5g37110.1 68418.m04454 hypothetical protein                          29   2.2  
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro...    27   6.7  
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,...    27   6.7  
At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138...    27   6.7  
At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR...    27   8.9  
At5g40470.1 68418.m04908 expressed protein                             27   8.9  
At4g10090.1 68417.m01651 expressed protein                             27   8.9  
At2g05080.1 68415.m00530 hypothetical protein low similarity to ...    27   8.9  
At2g04460.1 68415.m00450 expressed protein                             27   8.9  

>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +2

Query: 359 HRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMILG 538
           HR+  VV++ +  ++K    + +  K +  I  + E     + +    RR++ DYE  LG
Sbjct: 422 HRSYAVVDEMVTREVKKDPAVRQVYKLLTSIHSIFEQISEKILMTDRFRRETVDYEKKLG 481


>At5g37110.1 68418.m04454 hypothetical protein
          Length = 1307

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +2

Query: 278 SHEIPDKLKDIPTSANPKFFHMV-EYFFHRACQVVEDK--LVEDLKSRTPIEEKKKKVAG 448
           S EIPDKLKD      P+ F ++ E   H  C VV  K   +E+ K RT    +KK    
Sbjct: 532 SAEIPDKLKD------PELFEVIKESMVHGPCGVVNPKCPCMENGKRRTDDFVEKKDFKC 585

Query: 449 ILKLMEPCDHILEIQF 496
             + + P +  L +++
Sbjct: 586 DNRYVIPYNRSLSLRY 601


>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
           protein
          Length = 210

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 145 HHAASQEYRQVSGSAAQEFCSK*SPQ--YNVPNHTSW 249
           H+    +  QVSG+   EFC   SP+  YN  +  SW
Sbjct: 38  HNHNLNDVTQVSGALEYEFCDSSSPKAVYNPGHDISW 74


>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
           putative contains Pfam profiles PF00005: ABC
           transporter, PF00664: ABC transporter transmembrane
           region
          Length = 1488

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 203 VQNEAL-NTMFRIIPAGVNVCCRTYAS 280
           + NE+L N  +  +P GVN+C   YAS
Sbjct: 207 LNNESLDNVEYDALPGGVNICPERYAS 233


>At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.; expression supported by MPSS
          Length = 590

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 430 EKESSRYSKTYGTMRSHS*DSISSEARFWRLRNDIRLSRTTFHTQD 567
           EK+  +Y+ TYG M S + D+++   R  R  N     +    T+D
Sbjct: 118 EKQKMKYNGTYGRMLSLATDALAEGMRDNRYCNGFDFEQNKLETKD 163


>At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
           Non-consensus TT donor splice site at exon 1
          Length = 1104

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 271 CAAADIHSSWYDSEHCIEGFILNRILERRN---H*LGDILEMQH 149
           C    I  + YDS+ C++  +L++IL +++   H LG I E  H
Sbjct: 238 CFMGTIDVNDYDSKLCLQNKLLSKILNQKDMKIHHLGAIEEWLH 281


>At5g40470.1 68418.m04908 expressed protein
          Length = 496

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = -3

Query: 343 HVEELRIRTCRNIFELIWNLMTSVC 269
           ++EE+ +RTCR+I +++   ++ +C
Sbjct: 250 NLEEIELRTCRSIVDVVLLKVSEIC 274


>At4g10090.1 68417.m01651 expressed protein
          Length = 262

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 195 LSGGTTDLAIFLRCSM-VAYYVKYDNRVRNRVALHLLNF*NKLIIFVSFMLDCSD 34
           LS  ++D  IFL  +   ++Y +   ++   +A H  N  N+L+ F   M+ CSD
Sbjct: 51  LSSNSSDALIFLAFARPFSHYDRILRKLGCNLATHKSN--NRLVFFDMLMVKCSD 103


>At2g05080.1 68415.m00530 hypothetical protein low similarity to
           SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 1238

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 278 SHEIPDKLKDIPTSANPKFFHMV-EYFFHRACQVVEDK 388
           S EIPDKLKD      P+ F ++ E   H  C VV  K
Sbjct: 399 SAEIPDKLKD------PELFEVIKEMMVHGPCGVVNPK 430


>At2g04460.1 68415.m00450 expressed protein 
          Length = 148

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 280 TSVCAAADIHSSWYDSEHCIEGFILNRILERR 185
           T+V A   +++ W   ++C +G ILNR++  R
Sbjct: 69  TNVYAVGSMNT-WAQGDYCCKGLILNRLVHDR 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,683,737
Number of Sequences: 28952
Number of extensions: 258493
Number of successful extensions: 600
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)