Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f16r
(749 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 28 0.069
EF592538-1|ABQ95984.1| 582|Tribolium castaneum beta-N-acetylglu... 25 0.65
AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembran... 23 2.0
AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembran... 23 2.0
AF017415-2|AAB70263.1| 284|Tribolium castaneum abdominal-A prot... 22 4.6
AF017415-1|AAB70262.1| 343|Tribolium castaneum abdominal-AII pr... 22 4.6
AF017414-2|AAB70261.1| 150|Tribolium castaneum abdominal-A prot... 22 4.6
AF017414-1|AAB70260.1| 209|Tribolium castaneum abdominal-AII pr... 22 4.6
AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface pro... 22 6.0
EF592539-1|ABQ95985.1| 630|Tribolium castaneum beta-N-acetylglu... 21 8.0
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 21 8.0
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 21 8.0
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 21 8.0
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 21 8.0
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 21 8.0
AF265213-1|AAF75277.1| 143|Tribolium castaneum putative cytochr... 21 8.0
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 28.3 bits (60), Expect = 0.069
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 549 STFHCR-TGNPIPVPWWLKDSSVFHCSSSSIRLQNVCK 439
+TF C GNPI WLKD + + +R+++V K
Sbjct: 345 ATFTCNFEGNPIKTISWLKDGHPIDHNEAVLRIESVRK 382
>EF592538-1|ABQ95984.1| 582|Tribolium castaneum
beta-N-acetylglucosaminidase NAG3 protein.
Length = 582
Score = 25.0 bits (52), Expect = 0.65
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 551 HDFFHRTSNELQLRCWQ 601
++ FH S+E+ L CWQ
Sbjct: 363 NELFHLGSDEVNLTCWQ 379
>AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembrane
transporter protein.
Length = 669
Score = 23.4 bits (48), Expect = 2.0
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = -1
Query: 626 ACGGSILTPASILTAAHCWFDGRNRAVRFTVVLGTP----FLFHGGLRIQASSIAVHHQY 459
ACG IL A++ + +R+V + +G P FL GG + SSI ++ ++
Sbjct: 529 ACGIMILV-ANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGFFLNVSSIPIYFKW 587
>AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembrane
transporter white protein.
Length = 669
Score = 23.4 bits (48), Expect = 2.0
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = -1
Query: 626 ACGGSILTPASILTAAHCWFDGRNRAVRFTVVLGTP----FLFHGGLRIQASSIAVHHQY 459
ACG IL A++ + +R+V + +G P FL GG + SSI ++ ++
Sbjct: 529 ACGIMILV-ANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGFFLNVSSIPIYFKW 587
>AF017415-2|AAB70263.1| 284|Tribolium castaneum abdominal-A
protein.
Length = 284
Score = 22.2 bits (45), Expect = 4.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 701 AIAPINYHPYLAGLLIDINELQSPAACGG 615
A+A YH + ++ +N PAA GG
Sbjct: 96 AVAAQFYHQAASAVVDPLNSCSQPAAPGG 124
>AF017415-1|AAB70262.1| 343|Tribolium castaneum abdominal-AII
protein.
Length = 343
Score = 22.2 bits (45), Expect = 4.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 701 AIAPINYHPYLAGLLIDINELQSPAACGG 615
A+A YH + ++ +N PAA GG
Sbjct: 155 AVAAQFYHQAASAVVDPLNSCSQPAAPGG 183
>AF017414-2|AAB70261.1| 150|Tribolium castaneum abdominal-A
protein.
Length = 150
Score = 22.2 bits (45), Expect = 4.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 701 AIAPINYHPYLAGLLIDINELQSPAACGG 615
A+A YH + ++ +N PAA GG
Sbjct: 96 AVAAQFYHQAASAVVDPLNSCSQPAAPGG 124
>AF017414-1|AAB70260.1| 209|Tribolium castaneum abdominal-AII
protein.
Length = 209
Score = 22.2 bits (45), Expect = 4.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 701 AIAPINYHPYLAGLLIDINELQSPAACGG 615
A+A YH + ++ +N PAA GG
Sbjct: 155 AVAAQFYHQAASAVVDPLNSCSQPAAPGG 183
>AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface
protein chaoptin protein.
Length = 782
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 470 ELQWKTLESLSHHG 511
+L W ++ SLSH G
Sbjct: 375 DLSWNSISSLSHGG 388
>EF592539-1|ABQ95985.1| 630|Tribolium castaneum
beta-N-acetylglucosaminidase FDL protein.
Length = 630
Score = 21.4 bits (43), Expect = 8.0
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +2
Query: 554 DFFHRTSNELQLRCW 598
+ FH +E+ L CW
Sbjct: 395 ELFHLGGDEVNLECW 409
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 21.4 bits (43), Expect = 8.0
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -1
Query: 746 QAEQHQIF-MQRIV--GGAIAPINYHPYLA 666
Q H ++ +Q I+ G AP+ YH +LA
Sbjct: 140 QKVSHTLYHLQDIIDRNGGRAPLTYHQFLA 169
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 192 HLH*WSWRCWYLPRRFWRPINY*PPR-KRMA 103
H H W W W L + W ++ P+ +R+A
Sbjct: 461 HQHAWIWLLWLLSQT-WITLHIWTPKCERLA 490
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 192 HLH*WSWRCWYLPRRFWRPINY*PPR-KRMA 103
H H W W W L + W ++ P+ +R+A
Sbjct: 461 HQHAWIWLLWLLSQT-WITLHIWTPKCERLA 490
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 192 HLH*WSWRCWYLPRRFWRPINY*PPR-KRMA 103
H H W W W L + W ++ P+ +R+A
Sbjct: 461 HQHAWIWLLWLLSQT-WITLHIWTPKCERLA 490
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 192 HLH*WSWRCWYLPRRFWRPINY*PPR-KRMA 103
H H W W W L + W ++ P+ +R+A
Sbjct: 461 HQHAWIWLLWLLSQT-WITLHIWTPKCERLA 490
>AF265213-1|AAF75277.1| 143|Tribolium castaneum putative cytochrome
P450 monooxigenaseCYP4Q3 protein.
Length = 143
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 530 LGTPFLFHGGLRIQASSIAVHHQYD 456
LG F+ GL++ S+I H YD
Sbjct: 86 LGEDFVTCNGLKLPKSTITHLHIYD 110
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,348
Number of Sequences: 336
Number of extensions: 4757
Number of successful extensions: 25
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -