Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f16r
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    27   2.2  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.9  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   2.9  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.8  
SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy...    26   5.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.6  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   6.6  

>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 241 DIVCRKTFLAIVFVVGFITSEYLP 312
           D  C KT L  VF +G+  +EY+P
Sbjct: 16  DGACGKTSLLSVFTLGYFPTEYVP 39


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
 Frame = -1

Query: 446  FANDIAMLYLPRRIIFNHAVQPIPLATDSLL--STDKAGMWAVAAGYGRYSDVINPTTNT 273
            FAN    +Y P+RI+  +      +  D L+  S D      V   +  ++   N   NT
Sbjct: 791  FANSTEPIY-PKRILSANCSSKFIVLEDCLIIYSNDTDESDIVKNTFVSFNTTSNSLGNT 849

Query: 272  MARNVFLQTISLETCRGYYGNVVLDSNICTSGVGGVGIC 156
             A +     I+       Y N+    N+     G VG C
Sbjct: 850  TALSQLKGHINSVIVDDSYNNIFFGGNLSEQSSGCVGFC 888


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 394 WLNIIRRGKYSIAMSFANVLKSY 462
           WL +I   +Y +A  FAN LK Y
Sbjct: 465 WLLVISVDQYHLATKFANYLKEY 487


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 288 SYDKHDGEKCFSTNYILRNLPWLL 217
           S D HD    F   Y++ N PW +
Sbjct: 123 STDDHDWHDIFMIGYLISNAPWFI 146


>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = -1

Query: 362 SLLSTDKAGMWAVAAGYGRYSDVINPTTNTMARNVFLQTISLETCRGYYGNVVLDSNICT 183
           S++ T +  + A A GYGR  ++  PTT    R +  +   L    G     V   N   
Sbjct: 133 SVVPTQQNSVMAEAEGYGRICELKIPTT---LRELVQRAKEL---TGLQYVQVCAPNGLD 186

Query: 182 SGVGGVGICRGDSGGPLTINHQGKEWLIG 96
           S +  V +C G SGG + +N     +  G
Sbjct: 187 SHISKVSLCAG-SGGSVVMNTDADLYFTG 214


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +1

Query: 40   AKTDGKPNSQPSLATNELTPMSHSFPWWLIVNGPPESPRQIPTPPTPLVQMLESKTTLP 216
            A ++  P   P    + + P+    P  ++ N P  +P   P PP P+ Q+  +   +P
Sbjct: 1438 APSNHAPQVVPPAPMHAVAPVQPKAPG-MVTNAP--APSSAPAPPAPVSQLPPAVPNVP 1493


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 617 GSILTP-ASILTAAHCWFDGRNRAVRFTVVLGTPF 516
           G ILTP  S +T    W    N+  RF++V+G PF
Sbjct: 429 GIILTPEVSAVTLCLFW----NKMTRFSLVVGAPF 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,393,302
Number of Sequences: 5004
Number of extensions: 74458
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)