Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f16r
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    35   0.066
At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)...    29   4.4  
At2g25010.1 68415.m02990 expressed protein                             29   4.4  
At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family...    28   7.6  
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi...    28   7.6  
At1g15110.1 68414.m01804 phosphatidyl serine synthase family pro...    28   7.6  

>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 70  PSLATNELTPMSHSFPWWLIVNGPPESPR--QIPTPPTPLVQMLESKTTLP 216
           P+L  N L P   S P   ++  PP  P    +PTPPTP +  + +  TLP
Sbjct: 284 PTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPIPTIPTLP 334


>At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)
           nearly identical to SH3 domain-containing protein 3
           [Arabidopsis thaliana] GI:16974680; contains Pfam
           profile PF00018: SH3 domain
          Length = 351

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 746 QAEQHQIFMQRIVGGAIAPINYHPYLAGLLIDI 648
           +++QH++  QR+V       NYH  +A +L DI
Sbjct: 222 ESQQHRLTFQRLVAMVEGEKNYHLRIAAILSDI 254


>At2g25010.1 68415.m02990 expressed protein
          Length = 509

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 630 GRVRRIDPYPCQHLNCSSLLVRWKKSCSTFHCRTG 526
           G  R+I P    +   S+L+ RW++  +TFH   G
Sbjct: 61  GYFRKIGPMSLNNSLISALVERWRRETNTFHLPLG 95


>At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family
           protein sequencing discrepancy between cDNA and genomic
           sequence prevents representation of entire coding
           sequence
          Length = 578

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 139 PPESPRQIPTPPTPLVQMLESKTTLP**PRQVSKDIVCRKTFL 267
           PP  P+ I  PP+  +    SK+ LP  PR  +   +  K+ L
Sbjct: 480 PPPPPKTIAPPPSKTMSPPSSKSMLPPPPRSKTMSPLSSKSML 522


>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
           to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
           associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
           splicing factor SF3b 49 kDa subunit) {Homo sapiens};
           contains Pfam profile PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 363

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/71 (30%), Positives = 27/71 (38%)
 Frame = +1

Query: 19  ALKEGTLAKTDGKPNSQPSLATNELTPMSHSFPWWLIVNGPPESPRQIPTPPTPLVQMLE 198
           A K+ T  +  G P  +   ATN     S   P  L   GPP S  Q+   P P      
Sbjct: 189 AYKKDTKGERHGTPAERLLAATNPTAQKSR--PHTLFAMGPPSSAPQVNGLPRPFANGSM 246

Query: 199 SKTTLP**PRQ 231
               +P  PRQ
Sbjct: 247 QPVPIP-APRQ 256


>At1g15110.1 68414.m01804 phosphatidyl serine synthase family
           protein contains Pfam profile: PF03034 phosphatidyl
           serine synthase
          Length = 425

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 392 AVQPIPLATDSLLSTDKAGMWAVAAGYGRYSDVINPTT 279
           A+ P    +D L+++ K G+WA+ A +  YS +  P+T
Sbjct: 59  ALDPDSTTSDDLVTSVKRGVWAMIAVFLAYSLLQAPST 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,203,297
Number of Sequences: 28952
Number of extensions: 420258
Number of successful extensions: 1301
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)