Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f16f
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    29   0.54 
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   2.2  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.0  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   8.8  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   8.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   8.8  

>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
 Frame = +2

Query: 128 RLSKRNNTKYLC---SASLGELLRQSITIHI 211
           R +KR+N +YLC   SAS+G +LR ++ I++
Sbjct: 300 RFNKRDNEEYLCTHPSASVGGILRGNLHINL 330


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 488 WLNIIRRGKYSIAMSFANVLKSY 420
           WL +I   +Y +A  FAN LK Y
Sbjct: 465 WLLVISVDQYHLATKFANYLKEY 487


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 265 GSILTP-ASILTAAHCWFDGRNRAVRFTVVLGTPF 366
           G ILTP  S +T    W    N+  RF++V+G PF
Sbjct: 429 GIILTPEVSAVTLCLFW----NKMTRFSLVVGAPF 459


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 141 RLLNLCSRFNANFFEPSYKF--FVGATFTTCVGHKAQNEK 28
           RL NLCS F +   + + +F      T++TC  H+ +NE+
Sbjct: 316 RLENLCS-FQSTILKHALQFPNCRHVTYSTCSVHRLENEQ 354


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 405 NGRRLNP*ATMEQEWGSQYDSETYCTISSIEPAMSCS 295
           NG  L+  +  + + G  Y S ++  +S I P   CS
Sbjct: 178 NGELLSTSSARQNQTGLSYPSVSFSLLSQITPHQRCS 214


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 175 GGAIAPINYHPYLAGLLIDINELQSPAACGG 267
           GGAI  +  +      L++   + SP+ACGG
Sbjct: 491 GGAITSVPPYSLQNSQLMNGTSMSSPSACGG 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,248
Number of Sequences: 5004
Number of extensions: 59362
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)