Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f08r
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...    28   4.1  
At4g35070.1 68417.m04978 expressed protein                             27   5.4  
At4g14280.1 68417.m02201 hypothetical protein                          27   7.1  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    27   7.1  
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq...    27   9.4  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +1

Query: 169 PAPDKADSRELGHPYFPGSD---GPDASTGGRRVPHVDSLRAGCRS 297
           PA  K   + LG P+  G D   GP    G RR    D  R G +S
Sbjct: 89  PATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGPKS 134


>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -3

Query: 181 CRGRGRFNFRHSPVQKLSTKRISLQCTDLGTLNLICPPVKHICICL 44
           C G G  N    P +K+        C   G   ++  P +H+C C+
Sbjct: 197 CGGEGDGN--SLPAKKMKMSSCCCNCGSNGVTRVLFLPCRHLCCCM 240


>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 206 TPTSRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSF 334
           TP  R  T L  +PA    LTL A  LAV  ++ + L  SL F
Sbjct: 27  TPEPRRPTQLPPVPAPEKKLTLFALRLAVLEKIASGL-GSLGF 68


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 205 VPVRDCPPCRGRGRFNFRHSPV 140
           V V D P   GRGR+N R SPV
Sbjct: 262 VDVYDLPGPAGRGRYNRRMSPV 283


>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
           ubiquitin ligase, contains two RING finger domain;
           identical to PRT1 [Arabidopsis thaliana] GI:3319884
          Length = 410

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 196 RDC--PPCRGRGRFNFRHSPVQKLSTKRISLQCTDLGTLNLICPPV 65
           +DC   P +  GRFN +H+P  +L   R      +  ++ ++  PV
Sbjct: 339 KDCYETPSKVPGRFNQQHTPDHRLELARSPQVLINFNSIGILLGPV 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,396,177
Number of Sequences: 28952
Number of extensions: 170244
Number of successful extensions: 379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)