Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f06r
         (735 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5FG38 Cluster: O-antigen polymerase; n=1; Flavobacteri...    38   0.26 
UniRef50_Q8ILT4 Cluster: Putative uncharacterized protein; n=2; ...    34   4.2  
UniRef50_Q6CS94 Cluster: Similar to sgd|S0004414 Saccharomyces c...    33   5.5  
UniRef50_Q8CNN0 Cluster: Transposition regulatory protein tnpA; ...    33   9.6  
UniRef50_A0CSY6 Cluster: Chromosome undetermined scaffold_26, wh...    33   9.6  

>UniRef50_A5FG38 Cluster: O-antigen polymerase; n=1; Flavobacterium
           johnsoniae UW101|Rep: O-antigen polymerase -
           Flavobacterium johnsoniae UW101
          Length = 773

 Score = 37.9 bits (84), Expect = 0.26
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
 Frame = -3

Query: 400 TLAMLNYVFYFLSKSLLNPPTRYMYSMTGEIVFRYKFIFNGDNCGCSLGMILVLVNSVAV 221
           +L +++++ YF S  ++NP  +++Y     ++F   F FN +          VL N+V  
Sbjct: 30  SLLIIDFLPYFKSLEIINP--QFLYLSVINLIFGIYFYFNTN----------VLSNTVFS 77

Query: 220 RMNRKYYLKLV---ICMCNVSSLVSRNAVLVFLKY 125
            + R Y  +L    I +C +S   ++N+ LVF K+
Sbjct: 78  LLKRSYIFRLYLAFILLCGISLFSAKNSSLVFTKF 112


>UniRef50_Q8ILT4 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 2280

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -3

Query: 517  SECDFLELKS*QFSNISVCYDLHPLAINGLVVLSESARSTLAMLNYVFYFLSKSL 353
            + C  +E+K+   S+  + ++L P  +N L  ++   R ++   +YVFYF  KS+
Sbjct: 1754 NSCKDVEIKNVDISSEKMNFNLWPTRVNILKAVNWLVRDSIPFGSYVFYFAGKSV 1808


>UniRef50_Q6CS94 Cluster: Similar to sgd|S0004414 Saccharomyces
            cerevisiae YLR422w; n=1; Kluyveromyces lactis|Rep:
            Similar to sgd|S0004414 Saccharomyces cerevisiae YLR422w
            - Kluyveromyces lactis (Yeast) (Candida sphaerica)
          Length = 1940

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 22/58 (37%), Positives = 29/58 (50%)
 Frame = +1

Query: 334  IVSEDLKGISTKNKIHNLTLLKSILLTRSRQPSR*SLTGADHNTLICSKIVTISILRN 507
            I S    G +TKN +H+LT+  S   T+S  PS      A H T I      IS+LR+
Sbjct: 1885 IRSAGSNGSATKNSMHDLTVTSSHRTTKSNAPSH----AASHATRISRPTTHISMLRS 1938


>UniRef50_Q8CNN0 Cluster: Transposition regulatory protein tnpA;
           n=2; Staphylococcus epidermidis|Rep: Transposition
           regulatory protein tnpA - Staphylococcus epidermidis
           (strain ATCC 12228)
          Length = 383

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 180 IHITNFK*YFRFIRTATELTKTRIIPREHPQLSPLKINLYLKTISPVIEYIYR 338
           +   NF  + R+++T  E        R+   +SP  INL +  +S   +Y+YR
Sbjct: 81  VSFDNFVDFIRWMKTPFEYENVLSYHRKEKSISPKTINLTMTVVSNFYDYLYR 133


>UniRef50_A0CSY6 Cluster: Chromosome undetermined scaffold_26, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_26,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 508

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 385 NYVFYFLSKSLLNPPTRYMYSMTGEIVFRYKFIFNGDN 272
           N +FYF +K + N  T+  YS+    ++RY  + NG N
Sbjct: 351 NILFYFGAKLMRNNATKRAYSILNHFLYRYGHLSNGMN 388


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,277,752
Number of Sequences: 1657284
Number of extensions: 13684427
Number of successful extensions: 33120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33112
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)