Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f06r
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    28   1.2  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.8  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   6.4  
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po...    26   6.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   8.5  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 276 SPLKINLYLKTISPVIEYIYRVGG 347
           +P +INLY  T+SP   Y + +GG
Sbjct: 192 NPYRINLYTITMSPSNPYYFAIGG 215


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 313 EIVFRYKFIFNGDNCGCSLGMILVLVNSVAVRMN 212
           ++V++YK  F   NCG  LG  + ++ S  +  N
Sbjct: 665 QVVYQYKADFLWRNCGIILGFAIFILASSLILAN 698


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 68  YLSYI*HVYEYLLS 27
           Y++YI H+YEYL+S
Sbjct: 179 YINYITHLYEYLVS 192


>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 325 NTYIVSEDLKGISTKNKIHN 384
           NTYI+SE +KG ST++  HN
Sbjct: 176 NTYIISEAVKGSSTES--HN 193


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 605 CDPISTSPQTRTSRNARSXATKAYISYRDYYHTRFENVRTRII 733
           C  ++    T    + +S   K +I  +DYY +RF     R I
Sbjct: 785 CQTVTDDEGTDQQSDEKSTEPKTFIPDKDYYWSRFPICTERAI 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,875
Number of Sequences: 5004
Number of extensions: 62738
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)