Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f06r
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0631 - 5473382-5474135,5474767-5475119,5475481-5475543           29   2.9  
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    28   8.8  
01_01_0094 - 730484-731570,732030-732715                               28   8.8  

>08_01_0631 - 5473382-5474135,5474767-5475119,5475481-5475543
          Length = 389

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -2

Query: 713 SRI*YDNNLGKIYTLWSLDFVHSDWCEFVGMSISGRRSCSFV 588
           +R+  D + GK+ + W+ +FV SD  +++G   +  +S   +
Sbjct: 108 ARVAVDRSAGKLESFWAQNFVTSDLLKYIGERTTSLKSIRLI 149


>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 475 NISVCYDLHPLAINGLVVLSESARSTLAMLNYVFYF 368
           +++V +    L ++  +V +  ARS LA +NY +YF
Sbjct: 661 SLAVDHKYFRLQVHACIVDARLARSLLATINYYYYF 696


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -3

Query: 484 QFSNISVCYDLHPLAINGLVVLSESARSTLAMLNYVFYFLSKSLLNPPTRYMYS 323
           Q  N S+ + L PLA+  L  L++    T   ++ V  FL   L+  PTRY Y+
Sbjct: 222 QCLNRSIRFVLAPLAL--LTFLAQRYWKTRITIDAVEKFLRMQLMLGPTRYTYT 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,955,175
Number of Sequences: 37544
Number of extensions: 348224
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)