Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f06r
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_14974| Best HMM Match : PA14 (HMM E-Value=0.73)                     29   3.0  
SB_14971| Best HMM Match : CHGN (HMM E-Value=0.0084)                   29   3.9  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    29   5.2  

>SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 404 IDFSNVKLCILFFVEIPFKSSDTIYVF---NDRRNCL 303
           I F N +LC LF +E  +   + IY+F    DR  CL
Sbjct: 28  IVFLNAELCALFGLEAKYDQMEAIYIFCDIVDRSQCL 64


>SB_14974| Best HMM Match : PA14 (HMM E-Value=0.73)
          Length = 611

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 430 LVVLSESARSTLAMLNYVFYFLSKSLLNPPTRYMYSM 320
           LV++    +S L +LNY F F +KS L  P R    M
Sbjct: 335 LVLIDNPTKSKLRVLNYFFKFKNKSTLCIPARLALRM 371


>SB_14971| Best HMM Match : CHGN (HMM E-Value=0.0084)
          Length = 598

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 430 LVVLSESARSTLAMLNYVFYFLSKSLLNPPTRYMYSM 320
           L+++    +S L +LNY F F +KS L  P R    M
Sbjct: 299 LILIDNPTKSKLRVLNYFFKFKNKSTLCIPARLALRM 335


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 481 FSNISVCYDLHPLAINGLVVLSESARSTLAMLNYVFYFLSKSLLNPP 341
           FS +   Y  HP A+NG V++  S   T  + +   YF S+ L N P
Sbjct: 710 FSFLRYFYLYHPCAMNGSVIVDASFTLTGDVSDPEEYFKSELLKNAP 756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,800,302
Number of Sequences: 59808
Number of extensions: 436642
Number of successful extensions: 980
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)