Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f06r
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50027-7|CAA90332.3|  460|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical pr...    29   4.5  
L08403-1|AAA28025.1|  810|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z73911-2|CAC42338.2|  402|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF047665-3|AAC04456.3|  566|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z50027-7|CAA90332.3|  460|Caenorhabditis elegans Hypothetical
           protein C39B10.2a protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -2

Query: 662 LDFVHSDWCEFVGMSISGRRSCSFVGGLMLDHVAHKRSPSNNRFDNFSF*MRFLRIEIVT 483
           +D ++ DWC +   + +GR+S S + G + +   +  SP  NR+        FL I + +
Sbjct: 358 VDALNDDWCTY--STENGRKSFSAMVGDIFERAGNAISPRRNRYRGVDQCGHFLLITLKS 415

Query: 482 I 480
           I
Sbjct: 416 I 416


>Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical
           protein C39B10.2b protein.
          Length = 564

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 662 LDFVHSDWCEFVGMSISGRRSCSFVGGLMLDHVAHKRSPSNNRF 531
           +D ++ DWC +   + +GR+S S + G + +   +  SP  NR+
Sbjct: 374 VDALNDDWCTY--STENGRKSFSAMVGDIFERAGNAISPRRNRY 415


>L08403-1|AAA28025.1|  810|Caenorhabditis elegans Hypothetical
           protein F42H10.5 protein.
          Length = 810

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 523 KLSNRLFDGLRL*AT*SNMSPPTKEH 600
           KL+  LF+GLR     SN SPPT  H
Sbjct: 185 KLNEMLFNGLRQATNNSNGSPPTTPH 210


>Z73911-2|CAC42338.2|  402|Caenorhabditis elegans Hypothetical
           protein T12A7.6 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 469 ICSKIVTISILRNRIQNEKLSNRLFD 546
           ICS  +T S+ +NRI+  KLS+  F+
Sbjct: 37  ICSSSITTSLFQNRIRWRKLSDLAFE 62


>AF047665-3|AAC04456.3|  566|Caenorhabditis elegans Hypothetical
           protein T23E1.1 protein.
          Length = 566

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 316 RSLNTYIVSEDLKGISTKNKIHNLTLLKSILLTRSRQPSR*SLTGADHNTLICSKIVTIS 495
           R +    V+E LK I       N+T   S+L   + +     + G +    ICSK+  I 
Sbjct: 424 RLITNQDVAETLKHIIYDQNQENVTFENSLLSRENSKSRSCDIAGIEDEFCICSKLAQIG 483

Query: 496 ILRNRI 513
           I +  I
Sbjct: 484 IDKRSI 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,138
Number of Sequences: 27780
Number of extensions: 346887
Number of successful extensions: 817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)