Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f06f
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    47   2e-06
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    46   3e-06
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    29   0.48 
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    28   0.83 
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    28   0.83 
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   1.9  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   4.4  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   4.4  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   4.4  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   5.9  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   5.9  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   5.9  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   7.7  

>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 2/165 (1%)
 Frame = +3

Query: 78  DFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNFEGLQKFIKEVN 257
           D P  + VI+VGT +  SI++AA S   + VLH+D +  YG +  S     L++  +++ 
Sbjct: 2   DDPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIK 61

Query: 258 SDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFNIDTTPKLL 437
                Q    N S K  +++   Q              +   D   + +   I   P+ +
Sbjct: 62  KVDSSQILNDNGSHKSPLKRFEVQ--------------FLNKDLIPKNKGSVIQFHPQEI 107

Query: 438 FSRGPLVELLISSNIARYAEFRCVT--RVLTWLNDQLMPVPCSRA 566
           F+   LV+LL  + I +Y   +     R+LT  N++ + VP SRA
Sbjct: 108 FASSELVKLLSETKIYKYLLLKPARSFRLLT-SNEEWIKVPESRA 151


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = +3

Query: 90  DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNFEGLQKFIKEVNSDPD 269
           ++ VIV+GTG+ E +++   S  GK VLH+D +D+YG   AS N   L    +     P+
Sbjct: 4   EYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFRPGEQRPE 63



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 402 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVP 554
           R + +D  PK L + G L  +LI +++ RY EF+ +     + + ++  VP
Sbjct: 69  RDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVP 119


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
 Frame = +3

Query: 261 DPDRQKQVYNLSEKWFIEKESAQGE--TTDENKGEPRKVWSQADFAAEYRKFNIDTTPKL 434
           DP  Q +V     K  + K S      T ++  GEP+        A+ Y  F +   PKL
Sbjct: 302 DPAHQDEVEVFGRKIIVPKASGNVAWFTFEQLCGEPKSAADYLSLASRYHVFIVSDIPKL 361

Query: 435 LFSRGPLVELLISSNIARY 491
                 L+   I+   A Y
Sbjct: 362 SIESKDLIHRFITFIDALY 380


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 99  VIVVGTGMVESIVAAACSRIG-KNVLHMDSSDHYGGLWASHNFEGLQK 239
           V+V+G G      AAA SR+G K  L   S D+ G +  +  F G+ K
Sbjct: 19  VVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQMSCNPAFGGIGK 66


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 432 ALELYQC*ISDTPLQNQLGSILFLVHLCFHQLFRLVQ 322
           AL   QC +   PL  ++GS  FL+ L FH LF  +Q
Sbjct: 34  ALFACQCLVLIRPLARKIGSFPFLI-LTFHTLFYPIQ 69


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +3

Query: 255 NSDPDRQKQVYNLSEKWFIEKE-SAQGETTDENKGEPRKVWSQADFAAEYR 404
           NSDP  + + Y     WF   +  A     D+  GE    WS  D    Y+
Sbjct: 240 NSDPQFRPK-YQAKSSWFAPDDPEASWGNLDDGWGETNGSWSSTDDTKHYK 289


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 194 MITRVHVEDILAYPTASSSHYGLDHARSHHDDL 96
           +I  ++V  I+  PTA++  YGLD +  H  ++
Sbjct: 161 LIAGLNVLRIINEPTAAAIAYGLDRSNQHETNV 193


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 195  YGGLWASHNFEGLQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENK 353
            YG   +    +G+  F    +SDP R   V++ + +W    E +Q +  DE K
Sbjct: 859  YGAGLSYSGIDGVLSFFTYRDSDPIRSLSVFDEASEWATTHEFSQRD-IDEAK 910


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 174 HMDSSDHYG-GLWASHNFEGLQKFIKEVNSDPDRQKQVYNLSEKWF 308
           H+  +D  G  LW S + + ++ +I   N+DP  Q  +Y +S+  +
Sbjct: 97  HLCEADQLGLYLWNSTSAKSIRSYIIPTNADP--QNIIYEISQSGY 140


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 120 MVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNF 224
           +V+S++A    R+  ++  +DS  H G  +A+  F
Sbjct: 679 IVDSVLATGIQRLDTSLYELDSPMHAGNQYATPEF 713


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +3

Query: 234 QKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFN 413
           Q F++E   D D          +W IE E  + E     K +P    S  DF+ E     
Sbjct: 202 QPFVEEGEKDYDEAAAAKAGKSEWEIEFEKFKLE----QKKQPDVASSDGDFSDEPESEE 257

Query: 414 IDTTPKLLFS 443
            D  P+L+ S
Sbjct: 258 RDEVPELVSS 267


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 96  QVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGG 203
           Q IV+G G+           +G NVL +D +  +GG
Sbjct: 40  QAIVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGG 75


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/66 (22%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
 Frame = +3

Query: 183 SSDHYGGLWASHNFEGLQKFIKEVNSDPDRQKQVYNLS----EKWFIEKESAQGETTDEN 350
           SS +   + +SH+     +++ +++ + +R+K++YN S    ++  ++K+ AQ E   + 
Sbjct: 34  SSPNESVIHSSHSASEADEYVCKLSYEGNRKKRIYNGSAEAGKEKKLQKQRAQEERIRQK 93

Query: 351 KGEPRK 368
           + E  K
Sbjct: 94  EAERLK 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,093
Number of Sequences: 5004
Number of extensions: 49619
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)