Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f06f
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   78   4e-15
SB_30272| Best HMM Match : GDI (HMM E-Value=0)                         39   0.002
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.053
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.50 
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_32101| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_56832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_56308| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         29   3.5  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     28   4.6  
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            28   6.1  
SB_26320| Best HMM Match : PGM_PMM_IV (HMM E-Value=10)                 28   6.1  
SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)          28   6.1  
SB_563| Best HMM Match : Ank (HMM E-Value=0)                           27   8.1  
SB_5545| Best HMM Match : MORN (HMM E-Value=1e-31)                     27   8.1  

>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 3/68 (4%)
 Frame = +3

Query: 75  EDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNFEGLQKFI--- 245
           EDFPT++  IV+GTG+ E++VAAA SRIG  VLH+D +D+Y   WAS  F+GL K+I   
Sbjct: 2   EDFPTEYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQWASFTFDGLLKWIQRN 61

Query: 246 KEVNSDPD 269
           +E+  D D
Sbjct: 62  QEILEDDD 69



 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 34/62 (54%), Positives = 45/62 (72%)
 Frame = +3

Query: 381 ADFAAEYRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCS 560
           +D    +R+FNID  PKLL SRG LVE LIS+NI+ YAEF+ V ++LT+L   +  VPCS
Sbjct: 316 SDLEPYHRQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQILTFLEGSMEAVPCS 375

Query: 561 RA 566
           R+
Sbjct: 376 RS 377


>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +3

Query: 90  DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWAS 215
           ++  +V+GTG+ E +++   S   K VLHMD + +YGG  AS
Sbjct: 4   EYDYVVLGTGLKECVLSGLLSLNKKKVLHMDRNKYYGGDCAS 45



 Score = 34.3 bits (75), Expect = 0.070
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 384 DFAAEYRKFNIDTTPKLLFSRGPLVELLISSNIA-RYAEFRCVTRVLTWLNDQLMPVPCS 560
           D   + R +N+D  PK L + G LV++L+ + +A +Y  F+ +     +    +  VP +
Sbjct: 64  DSLGKPRDYNVDLIPKFLMADGTLVKILVHTGVATKYMNFKQIEGSFVYRGGSVHKVPAN 123


>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +3

Query: 114 TGMVESIVAAACSRIGKNVLHMDSSDHYGGLWAS 215
           T   E I++ A S  GK VLHMDS   YGG  AS
Sbjct: 15  TRRYECILSGALSVAGKKVLHMDSQKFYGGETAS 48


>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 93  FQVIVVGTGMVESIVAAACSRIGK-NVLHMDSSDHYGGLW 209
           F V V+G G +  +  A C    K +++  + SDH GGLW
Sbjct: 11  FDVAVIGAG-ISGLATAKCLLDDKFSIIVYEQSDHIGGLW 49


>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +3

Query: 219 NFEGLQKFIKEVNSDPDRQKQVYNLS-EKW--FIEKESAQGETTD 344
           + + LQK ++E+NSD +R K     + +KW  F+ ++ + G TTD
Sbjct: 251 HLQNLQKELQEINSDTERDKTAAEKAIKKWVDFLIEKYSTGGTTD 295


>SB_32101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 401 ILRC--KISLAPYFSW-FTFVFISCFALCRFLFNK 306
           +LRC   I  A  FSW FT  F   FA C FLF++
Sbjct: 155 VLRCFFVIRFAVLFSWRFTVFFSRRFAFCVFLFSR 189


>SB_56832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +3

Query: 216 HNFEGLQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTD----ENKGEPRKVWSQA 383
           H   G +    ++++  + Q Q +  ++ + IEK   QG TT+    E +G  RK +   
Sbjct: 76  HGHGGFEPRTLQLSNGSNGQTQKHLSTKAYLIEKTETQGNTTEPCPLEMEGTQRKKYDGV 135

Query: 384 DFAAE 398
           ++ AE
Sbjct: 136 EYLAE 140


>SB_56308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 307 LLKRNLHKAKQLMKTKVNQEKYGAKLILQRSIGNLTLIQ 423
           L +R L KA ++ KT+++ E  G K  L  +I  L L+Q
Sbjct: 204 LARRTLKKALRISKTRLSGETEGIKKSLAAAIRGLGLVQ 242


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 454 RGPRENNSFGVVSMLNFRYSAAKSAWLHTFLGSPLFSSVVSPCADS 317
           RG  + N+ GV + ++    A +  WL+  L SP F+++V+ CA +
Sbjct: 86  RGDCQLNAKGVENEISDDL-ATREGWLYVQLRSPQFTTLVNACASN 130


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 231  LQKFIKEVNSDPDRQKQVY--NLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAA 395
            + K  KE+ ++PD+       + +++W   KE  +   TD    E +K  ++ADF A
Sbjct: 2466 VMKEYKELLANPDKMDSFLKEDYAKRWEPTKEEKEAAKTDPVLAEKQKELTKADFQA 2522


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
 Frame = -2

Query: 401 ILRCKISLAPYFSWFTFVFISCFALCRFLFNKPFFR*VVHLFLSIRITVHLFYELL*ALK 222
           I+ C+  L           ++C  LC+     P     + LF  I +   LF  +L    
Sbjct: 29  IVPCQSQLFTRIVLCQLQLVTCIVLCQLQLFTPIVLCQLQLFTCIVLCQQLFTRVLFLSI 88

Query: 221 IM*SPESSIMITRVHVEDILAYPTASSSHYGLDHARSH-HDDLEVSWKIFIHHS 63
            +     S++IT VHV   L+  T    H  L     H H  L ++  + +H S
Sbjct: 89  TIAHAHRSLLITIVHVHRSLSI-TIVHVHRSLSITIVHAHRSLSIT-IVHVHRS 140


>SB_26320| Best HMM Match : PGM_PMM_IV (HMM E-Value=10)
          Length = 237

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +3

Query: 210 ASHNFEGLQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADF 389
           A H  +GL    K     P+ +++      K  +EK  A   T DE+  +P   W  A F
Sbjct: 8   AMHRLKGL---FKTFERKPEMKREYLEFMGK-ILEKGHASPVTRDEDPPKPGHSWYLAHF 63

Query: 390 AAEYRKFNIDTTPKLLF 440
           A  +   NI  T +++F
Sbjct: 64  ATYH---NIKHTIRVVF 77


>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
          Length = 387

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 99  VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGL 206
           ++++G G++   + +  SR+G NV  ++   H GG+
Sbjct: 114 LVLIGAGVIGVELGSVWSRLGANVTAVEFLGHIGGI 149


>SB_563| Best HMM Match : Ank (HMM E-Value=0)
          Length = 753

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 384 QLGSILFLVHLCFHQLFRLVQIPFQ 310
           +LGSI+ L+  C+H L  L Q+ +Q
Sbjct: 623 RLGSIIILILACWHILMELFQMVYQ 647


>SB_5545| Best HMM Match : MORN (HMM E-Value=1e-31)
          Length = 186

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 153 RIGKNVLHMDSSDHYGGLWASHNFEGLQKFIKEV 254
           R G    +  + D Y G W  H    LQK I++V
Sbjct: 99  RNGHGTYYYPNGDTYEGNWYEHQRHALQKIIRKV 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,376,766
Number of Sequences: 59808
Number of extensions: 369017
Number of successful extensions: 1121
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)