Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f06f
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical ... 102 2e-22
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 102 2e-22
Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 44 3e-12
Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 44 3e-12
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 44 3e-12
Z66512-1|CAA91322.1| 638|Caenorhabditis elegans Hypothetical pr... 38 0.007
AC024843-3|AAF60838.1| 110|Caenorhabditis elegans Hypothetical ... 33 0.19
U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical pr... 32 0.33
U23529-6|AAL32208.1| 384|Caenorhabditis elegans Hypothetical pr... 31 0.44
U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell m... 29 1.8
U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical pr... 29 1.8
AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein. 29 1.8
Z49937-1|CAA90184.2| 670|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z72508-7|CAA96642.1| 336|Caenorhabditis elegans Hypothetical pr... 27 7.1
AF098989-3|AAK18953.2| 569|Caenorhabditis elegans Hypothetical ... 27 7.1
AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical ... 27 7.1
Z81065-1|CAB02968.1| 399|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical ... 27 9.4
>AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical
protein Y67D2.1b protein.
Length = 353
Score = 102 bits (244), Expect = 2e-22
Identities = 60/180 (33%), Positives = 98/180 (54%), Gaps = 15/180 (8%)
Frame = +3
Query: 69 MDEDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNF----EGLQ 236
MDE P V+V+GTG+ E+I+A+AC+R G +VLH+D +++YGG W+S E +
Sbjct: 1 MDEKLPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFTMSMVHEVTE 60
Query: 237 KFIKEVNSDPDRQKQVYNLSEKWFIE------KESAQGETTDENKGEPRKVWSQADFAAE 398
+K+++S + + IE E+ + K E + + +Q + A++
Sbjct: 61 NQVKKLDSSEISKLSELLTENEQLIELGNREIVENIEMTWIPRGKDEEKPMKTQLEEASQ 120
Query: 399 YRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLND-----QLMPVPCSR 563
R+F+ID PK+L S+G +V+ L S ++ YAEF+ V R L L PVPCS+
Sbjct: 121 MRRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSK 180
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 102 bits (244), Expect = 2e-22
Identities = 60/180 (33%), Positives = 98/180 (54%), Gaps = 15/180 (8%)
Frame = +3
Query: 69 MDEDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNF----EGLQ 236
MDE P V+V+GTG+ E+I+A+AC+R G +VLH+D +++YGG W+S E +
Sbjct: 1 MDEKLPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFTMSMVHEVTE 60
Query: 237 KFIKEVNSDPDRQKQVYNLSEKWFIE------KESAQGETTDENKGEPRKVWSQADFAAE 398
+K+++S + + IE E+ + K E + + +Q + A++
Sbjct: 61 NQVKKLDSSEISKLSELLTENEQLIELGNREIVENIEMTWIPRGKDEEKPMKTQLEEASQ 120
Query: 399 YRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLND-----QLMPVPCSR 563
R+F+ID PK+L S+G +V+ L S ++ YAEF+ V R L L PVPCS+
Sbjct: 121 MRRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSK 180
>Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 44.4 bits (100), Expect(2) = 3e-12
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = +3
Query: 90 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNFEGLQKFIKEVNSDPD 269
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 270 RQKQVYNLSEKWFIE 314
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
Score = 44.4 bits (100), Expect(2) = 3e-12
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 402 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVP 554
R +N+D PK L + GPLV+LLI + + RY EF+ + ++ VP
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVP 121
>Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 44.4 bits (100), Expect(2) = 3e-12
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = +3
Query: 90 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNFEGLQKFIKEVNSDPD 269
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 270 RQKQVYNLSEKWFIE 314
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
Score = 44.4 bits (100), Expect(2) = 3e-12
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 402 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVP 554
R +N+D PK L + GPLV+LLI + + RY EF+ + ++ VP
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVP 121
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 44.4 bits (100), Expect(2) = 3e-12
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = +3
Query: 90 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNFEGLQKFIKEVNSDPD 269
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 270 RQKQVYNLSEKWFIE 314
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
Score = 44.4 bits (100), Expect(2) = 3e-12
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 402 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVP 554
R +N+D PK L + GPLV+LLI + + RY EF+ + ++ VP
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVP 121
>Z66512-1|CAA91322.1| 638|Caenorhabditis elegans Hypothetical
protein F52H3.2 protein.
Length = 638
Score = 37.5 bits (83), Expect = 0.007
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Frame = +3
Query: 60 TRMMDEDFPTDFQVIVVGTGMVESIVAAACSRIGKN-VLHMDSSDHYGGLWASHNFEGLQ 236
TR++ F TD VIV+G G AAA +R G N VL + + G + + +F G+
Sbjct: 6 TRLLRRCFQTDVDVIVIGGGHAGCESAAAAARCGSNTVLVTQNKNTIGEMSCNPSFGGIG 65
Query: 237 K--FIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGE-PRKVWSQADFAAEYRK 407
K I+EV++ ++ + S + AQG + + RK++ +
Sbjct: 66 KGHLIREVDALDGLCARICDKSAITYQALNRAQGPAVLGLRAQIDRKLYK------TQMQ 119
Query: 408 FNIDTTPKLLFSRGPLVELLISS 476
I++T +L G + ELL+ +
Sbjct: 120 NEINSTKRLEILEGEVAELLVEN 142
>AC024843-3|AAF60838.1| 110|Caenorhabditis elegans Hypothetical
protein Y61A9LA.7 protein.
Length = 110
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/63 (23%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 225 EGLQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQAD-FAAEY 401
E + +++ ++ S PDR +++ +++ ++ + + +K EP+KV+ D F ++Y
Sbjct: 35 ESMDEYLAQILS-PDRLQELKTAHDEFEAQRRGKRAAISASDKPEPKKVFDIIDQFTSDY 93
Query: 402 RKF 410
+KF
Sbjct: 94 QKF 96
>U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical
protein C15B12.8 protein.
Length = 385
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 93 FQVIVVGTGMVESIVAAACSRIGKNVLHMD--SSDHYGGLWASHNFEGLQKFIKEVNSDP 266
+ VIVVG G+ S A C R+G L ++ S H G +SH G + I+ ++DP
Sbjct: 6 YDVIVVGAGIFGSCTAYHCQRLGLRTLLLEQYSLGHSNG--SSH---GKSRIIRYAHTDP 60
Query: 267 D 269
+
Sbjct: 61 E 61
>U23529-6|AAL32208.1| 384|Caenorhabditis elegans Hypothetical
protein C15B12.1 protein.
Length = 384
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +3
Query: 87 TDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSD--HYGGLWASHNFEGLQKF----IK 248
TD+ V+VVG G+ S A C +IG L ++ + H G +SH + ++ ++
Sbjct: 3 TDYDVVVVGAGIFGSCTAYNCQKIGLKTLLLEQFELGHKNG--SSHGKSRITRYAHTEVE 60
Query: 249 EVNSDPDRQKQVYNL 293
V+ D Q++ L
Sbjct: 61 YVDLVGDAYNQIFEL 75
>U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell
migration protein 23 protein.
Length = 552
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 400 YSAAKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFT 251
+S+++S W F S +F V CA S+ F DK + F +S S ++
Sbjct: 485 HSSSESLWAPLFFLSAVFCLFVLVCAKEQSVLCFDDKRRSSFGMSRSQYS 534
>U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical
protein C05D11.9 protein.
Length = 752
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -2
Query: 524 GQDAGHASELSVARDVRRDQKLDKGAAREQQLWSCINVKFP 402
G +AG SEL++ +++ ++ L K R + WS ++VK+P
Sbjct: 450 GSEAGRESELAMKKELI-EKYLGKPHNRRCKHWSAVSVKYP 489
>AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein.
Length = 552
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 400 YSAAKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFT 251
+S+++S W F S +F V CA S+ F DK + F +S S ++
Sbjct: 485 HSSSESLWAPLFFLSAVFCLFVLVCAKEQSVLCFDDKRRSSFGMSRSQYS 534
>Z49937-1|CAA90184.2| 670|Caenorhabditis elegans Hypothetical
protein F14F3.2 protein.
Length = 670
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +3
Query: 168 VLHMDSSDHYGGLWASHNFEGLQKFIKEVNSDPDRQKQ--VYNLSEKWFIEKESAQGETT 341
++H ++ + +W S +EG KF K + DP K+ V EK + + + E
Sbjct: 70 LVHALNTSNTNMIWESALYEGSTKFQKPMAQDPSHIKEQFVKEKYEKLTFQPKRGKDEDL 129
Query: 342 DENKGEPRKVWSQADFA 392
+ + +++DFA
Sbjct: 130 ENSLNRQLIACARSDFA 146
>Z72508-7|CAA96642.1| 336|Caenorhabditis elegans Hypothetical
protein F28H7.11 protein.
Length = 336
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 371 YFSWFTFVFISCFALCRFLFNKPF 300
YF W + FALC FL N F
Sbjct: 2 YFDWAQYFIPKFFALCSFLINPLF 25
>AF098989-3|AAK18953.2| 569|Caenorhabditis elegans Hypothetical
protein F47G6.2 protein.
Length = 569
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 268 IDKNKCTTYLKNGLLKRNLHKAKQLMKTKVN 360
+ K +CTT L NG R L K Q + K++
Sbjct: 304 VSKYRCTTLLSNGAALRLLLKISQTQRVKLS 334
>AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.10 protein.
Length = 250
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 452 GAAREQQLWSCINVKFPILRC-KISLAPYFS--WFTFVFISCFALCRF 318
G + +SC NV +P L C I+L+ S W T + C + C F
Sbjct: 106 GLCCQTDAYSCPNVAYPRLNCASITLSQCNSPAWRTIIAADCPSACGF 153
>Z81065-1|CAB02968.1| 399|Caenorhabditis elegans Hypothetical
protein F16C3.1 protein.
Length = 399
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 382 AWLHTFLGSPLFSSVVSPCADSFSINHFSD 293
+W T++G PL+S C + HFSD
Sbjct: 77 SWADTYMGLPLYSESELGCKFFSFLAHFSD 106
>AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.9 protein.
Length = 250
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 452 GAAREQQLWSCINVKFPILRC-KISLAPYFS--WFTFVFISCFALCRF 318
G + + ++C NV +P L C I+L+ S W T + C + C F
Sbjct: 106 GLCCQTEAYNCPNVAYPRLNCASITLSQCNSPAWRTIIAADCPSACGF 153
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,799
Number of Sequences: 27780
Number of extensions: 285234
Number of successful extensions: 1115
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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