Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f06f
(567 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote... 63 1e-10
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i... 48 4e-06
At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i... 47 8e-06
At1g57770.1 68414.m06554 amine oxidase family contains similarit... 33 0.13
At1g62580.1 68414.m07060 flavin-containing monooxygenase family ... 32 0.31
At1g62540.1 68414.m07056 flavin-containing monooxygenase family ... 31 0.71
At1g19250.1 68414.m02395 flavin-containing monooxygenase family ... 30 0.94
At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containi... 30 1.2
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein... 29 1.6
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein... 29 1.6
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein... 29 1.6
At1g63340.1 68414.m07160 flavin-containing monooxygenase-related... 29 1.6
At1g12200.1 68414.m01412 flavin-containing monooxygenase family ... 29 1.6
At1g62570.1 68414.m07059 flavin-containing monooxygenase family ... 29 2.9
At2g29720.1 68415.m03612 monooxygenase family protein nearly ide... 28 3.8
At1g51260.1 68414.m05765 acyl-CoA:1-acylglycerol-3-phosphate acy... 28 3.8
At1g12160.1 68414.m01408 flavin-containing monooxygenase family ... 28 3.8
At5g46340.1 68418.m05704 O-acetyltransferase-related similar to ... 28 5.0
At1g65860.1 68414.m07473 flavin-containing monooxygenase family ... 28 5.0
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi... 27 6.6
At2g46180.1 68415.m05742 intracellular protein transport protein... 27 6.6
At5g26990.1 68418.m03220 drought-responsive family protein non-c... 27 8.7
At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) / endo... 27 8.7
At3g46260.1 68416.m05007 protein kinase-related contains low sim... 27 8.7
At2g03090.1 68415.m00262 expansin, putative (EXP15) identical to... 27 8.7
At1g26770.1 68414.m03259 expansin, putative (EXP10) similar to e... 27 8.7
At1g06420.1 68414.m00679 expressed protein ; expression supporte... 27 8.7
>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
/ Rab GTPase activator family protein similar to
SP|P26374 Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) {Homo sapiens};
contains Pfam profile PF00996: GDP dissociation
inhibitor
Length = 563
Score = 63.3 bits (147), Expect = 1e-10
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Frame = +3
Query: 84 PTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNFEGLQKFIKEVNSD 263
P+++ +IVVGTG+ ES++AAA S G +VLH+D + YG +AS + L F+ +
Sbjct: 12 PSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDLTSFLHSNSVS 71
Query: 264 PDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWS-QADFAAEY-RKFNIDTT-PKL 434
P L + + + + ++ S +++ E+ R+FN+D P++
Sbjct: 72 PPPSPSSPPLPPS--NNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFNVDLAGPRV 129
Query: 435 LFSRGPLVELLISSNIARYAEFRCVTRVLTW-LNDQLMPVPCSRA 566
+F + L++ S Y EF+ + + +L VP SRA
Sbjct: 130 VFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRA 174
>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
identical to Rab GDP dissociation inhibitor AtGDI2
[Arabidopsis thaliana] GI:2446981
Length = 444
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 90 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNFEGLQKFIKEVNSDPD 269
+++VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K + P+
Sbjct: 4 EYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEKAPE 63
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +3
Query: 330 GETTDENKGEPRKVWSQADFAAEY----RKFNIDTTPKLLFSRGPLVELLISSNIARYAE 497
GE+T N + K + + A E+ R +N+D PK + G LV LI +++ +Y
Sbjct: 41 GESTSLNLNQLWKKFRGEEKAPEHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYLS 100
Query: 498 FRCVTRVLTWLNDQLMPVPCS 560
F+ V ++ ++ VP +
Sbjct: 101 FKAVDGSYVFVKGKVQKVPAT 121
>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
identical to GDP dissociation inhibitor [Arabidopsis
thaliana] GI:1655424
Length = 445
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +3
Query: 90 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNFEGLQK 239
+++VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K
Sbjct: 4 EYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQLWK 53
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +3
Query: 402 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCS 560
R +N+D PK + + G LV +LI +++ +Y F+ V ++ ++ VP +
Sbjct: 69 RDYNVDMMPKFMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVPAT 121
>At1g57770.1 68414.m06554 amine oxidase family contains similarity
to carotenoid isomerase [Lycopersicon esculentum]
GI:19550437, phytoene dehydrogenase (PDH1) GI:433144
from (Cercospora nicotianae); contains Pfam profile
PF01593 amine oxidase, flavin-containing
Length = 574
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +3
Query: 99 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNFE 227
V+V+G+G+ A +R ++V+ ++S DH GG A+H+FE
Sbjct: 55 VVVIGSGIGGLCCGALLARYDQDVIVLESHDHPGG--AAHSFE 95
>At1g62580.1 68414.m07060 flavin-containing monooxygenase family
protein / FMO family protein low similarity to SP|P97501
Dimethylaniline monooxygenase [N-oxide forming] 3 (EC
1.14.13.8) (Hepatic flavin-containing monooxygenase 3)
(FMO 3) {Mus musculus}; contains Pfam profile PF00743
Flavin-binding monooxygenase-like domain
Length = 497
Score = 31.9 bits (69), Expect = 0.31
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 87 TDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWA 212
T V V+G G + A R G +V+ + +H GG+WA
Sbjct: 10 TSNHVAVIGAGAAGLVAARELRREGHSVVVFERGNHIGGVWA 51
>At1g62540.1 68414.m07056 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase GB:AAA21178 GI:349534
from Oryctolagus cuniculus [SP|P32417], SP|P97501 from
Mus musculus; contains Pfam profile PF00743
Flavin-binding monooxygenase-like
Length = 457
Score = 30.7 bits (66), Expect = 0.71
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 99 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLW 209
V+V+G G + A SR G V+ ++ GGLW
Sbjct: 13 VVVIGAGAAGLVAARELSREGHTVVVLEREKEVGGLW 49
>At1g19250.1 68414.m02395 flavin-containing monooxygenase family
protein / FMO family protein low similarity to SP|P97501
Dimethylaniline monooxygenase [N-oxide forming] 3 (EC
1.14.13.8) (Hepatic flavin-containing monooxygenase 3)
(FMO 3) {Mus musculus}; contains Pfam profile PF00743:
Flavin-binding monooxygenase-like
Length = 515
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 87 TDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASHNFE 227
T +V ++G G+ S +AAA + + N ++SD GG+W S +E
Sbjct: 9 TSSRVAIIGAGV--SGLAAAKNLVHHNPTVFEASDSVGGVWRSCTYE 53
>At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 634
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 69 MDEDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDH 194
+D D +F V +V TG + +I S++ KN+ D SDH
Sbjct: 341 VDPDSAVEFLVYMVSTGKLPAI--RTLSKLSKNLCRHDKSDH 380
>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 162 KNVLHMDSSDHYGGLWASHNFEGLQKFIKEVNSDPDRQKQVYNLSEKWF 308
+N+L + S+++YGG W+ L K + N + +Q+QV N K F
Sbjct: 281 QNLLRLTSNNNYGGDWSF-----LDKLLTTGNMNQQQQQQVQNHQAKCF 324
>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 162 KNVLHMDSSDHYGGLWASHNFEGLQKFIKEVNSDPDRQKQVYNLSEKWF 308
+N+L + S+++YGG W+ L K + N + +Q+QV N K F
Sbjct: 281 QNLLRLTSNNNYGGDWSF-----LDKLLTTGNMNQQQQQQVQNHQAKCF 324
>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 162 KNVLHMDSSDHYGGLWASHNFEGLQKFIKEVNSDPDRQKQVYNLSEKWF 308
+N+L + S+++YGG W+ L K + N + +Q+QV N K F
Sbjct: 281 QNLLRLTSNNNYGGDWSF-----LDKLLTTGNMNQQQQQQVQNHQAKCF 324
>At1g63340.1 68414.m07160 flavin-containing monooxygenase-related /
FMO-related low similarity to flavin-containing
monooxygenase 2 (FMO2) from Homo sapiens [SP|Q99518]
Length = 398
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 87 TDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWA 212
T V V+G G + A R G +V+ + + GG+WA
Sbjct: 10 TSHHVAVIGAGAAGLVAARELRREGHSVVVFERGNQIGGVWA 51
>At1g12200.1 68414.m01412 flavin-containing monooxygenase family
protein / FMO family protein low similarity to FMO2 from
Homo sapiens [SP|Q99518]; contains Pfam profile: PF00743
Flavin-binding monooxygenase-like
Length = 465
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 78 DFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWA 212
D T V V+G G + A R G +V+ ++ GG+WA
Sbjct: 7 DPTTSRHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWA 51
>At1g62570.1 68414.m07059 flavin-containing monooxygenase family
protein / FMO family protein low similarity to
flavin-containing monooxygenase FMO3 [Rattus norvegicus]
GI:12006730; contains Pfam profile PF00743:
Flavin-binding monooxygenase-like
Length = 461
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 99 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLW 209
V V+G G + A R G V+ +D GGLW
Sbjct: 13 VAVIGAGAAGLVAARELRREGHTVVVLDREKQVGGLW 49
>At2g29720.1 68415.m03612 monooxygenase family protein nearly
identical to CTF2B [GI:4164578][Plant Physiol. 119, 364
(1999), PGR99-008]
Length = 427
Score = 28.3 bits (60), Expect = 3.8
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +3
Query: 36 LKPVCLI*TRMMDEDFPTDFQVIVVGTGMVESIVAAACSRIG--KNVLHMDSSDHYGGLW 209
LK VCL TR + +V++VG G+ A A R+G VL S GG
Sbjct: 24 LKSVCLTTTRAETSGVDREEKVVIVGGGIGGLATAVALHRLGIRSVVLEQAESLRTGGAS 83
Query: 210 ASHNFEGLQKFIKEVNSDPDRQKQ 281
+ + G + + ++ P +KQ
Sbjct: 84 LTLSKNG-WRVLDAISIGPQLRKQ 106
>At1g51260.1 68414.m05765 acyl-CoA:1-acylglycerol-3-phosphate
acyltransferase, putative similar to
acyl-CoA:1-acylglycerol-3-phosphate acyltransferase
GI:4583544 from [Brassica napus]
Length = 376
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 172 RTFLPILLQAAATMDSTMPVPTTMTWKSVGKSSSIILVYIRH 47
R+F+P + T+ + P PT + S G+SS I L RH
Sbjct: 215 RSFVPAIYDCTLTVHNNQPTPTLLRMFS-GQSSEINLQMRRH 255
>At1g12160.1 68414.m01408 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase FMO2 from Homo sapiens
[SP|Q99518]; contains Pfam profile PF00743
Flavin-binding monooxygenase-like
Length = 468
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 99 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLW 209
V V+G G + R G V+ + H GGLW
Sbjct: 12 VAVIGLGAAGLVAVRELRREGHTVIGFEREKHVGGLW 48
>At5g46340.1 68418.m05704 O-acetyltransferase-related similar to
O-acetyltransferase [Homo sapiens] GI:17016934
Length = 540
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 387 NQLGSILFL-VHLCFHQLFRLVQIPFQ*TIFQISCTLVFVYQDHCSP 250
N++GS++ L + CF +F L +IP IF T + Y D P
Sbjct: 281 NEIGSVMALKIFSCFLVVFLLWEIPGAFEIFWGPLTFLLGYNDPAKP 327
>At1g65860.1 68414.m07473 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase FMO3 (dimethylaniline
monoxygenase (N-oxide forming) 3) GI:349533 [SP|P32417]
from Oryctolagus cuniculus, [SP|P97501] from Mus
musculus; contains Pfam profile PF00743 Flavin-binding
monooxygenase-like domain
Length = 459
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 99 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLW 209
V V+G G + A R G V+ D GGLW
Sbjct: 13 VAVIGAGAAGLVTARELRREGHTVVVFDREKQVGGLW 49
>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 747
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -3
Query: 433 SFGVVSMLNFRYSAAKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLS 266
S GV ++ ++ +K A H F S LFS + S C+D++ + H ++ + +C S
Sbjct: 132 SKGVQYVIYWKNVFSKYAACH-FRHS-LFSVIQSSCSDTWDVFHVAEASFRLYCTS 185
>At2g46180.1 68415.m05742 intracellular protein transport protein
USO1-related similar to Intracellular protein transport
protein USO1 (Swiss-Prot:P25386) [Saccharomyces
cerevisiae]
Length = 725
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 219 NFEGLQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDEN 350
+ + L+K ++E + D+ +Q ++ +EKE+ + E DE+
Sbjct: 352 SLQRLEKELEEARREKDKARQELKRLKQHLLEKETEESEKMDED 395
>At5g26990.1 68418.m03220 drought-responsive family protein
non-consensus AT donor splice site at exon 3, AC
acceptor splice site at exon 4; similar to
drought-induced mRNA, Di19 [Arabidopsis thaliana]
gi|469110|emb|CAA55321
Length = 222
Score = 27.1 bits (57), Expect = 8.7
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = -3
Query: 397 SAAKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFTSFMNFCRPSKL 218
S A S+ + PL SS +SP AD F I+ S C S +N P +
Sbjct: 135 SRAVSSSSASIAADPLLSSFISPMADDFFISESS------LCADTSSAKKTLNQSLPERN 188
Query: 217 CEAQS 203
E QS
Sbjct: 189 VEKQS 193
>At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) /
endo-xyloglucan transferase / xyloglucan
endo-1,4-beta-D-glucanase (SEN4) identical to
endo-xyloglucan transferase gi:944810, SP|P24806 MERI-5
protein precursor (Endo-xyloglucan transferase)
(Xyloglucan endo-1,4-beta-D-glucanase) {Arabidopsis
thaliana}
Length = 269
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 372 WSQADFAAEYRKFNIDTTP 428
WS+A F A YR ID+ P
Sbjct: 203 WSKAPFMASYRNIKIDSKP 221
>At3g46260.1 68416.m05007 protein kinase-related contains low
similarity to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 434
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -2
Query: 557 ARNRHQLIVEPGQDAGHASELSVARDVRRDQKLDKGAAREQQLWSCINVKFPILRCKISL 378
A + QL+ + D+G + +S D G+ Q S N KF + CK +
Sbjct: 326 ASSESQLVFKSTDDSGLPTIISGLEVYSISNYKDHGSGGGGQSGSSNNGKFLLNLCKCFI 385
Query: 377 APYFSW 360
+FSW
Sbjct: 386 NNFFSW 391
>At2g03090.1 68415.m00262 expansin, putative (EXP15) identical to
SWISS-PROT:O80622 alpha-expansin 15 precursor
(At-EXP15)[Arabidopsis thaliana]; alpha-expansin gene
family, PMID:11641069
Length = 253
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 364 LGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFTSFMNFCRPS 224
L + LF++ +S C F I SD + CL G++ + NFC P+
Sbjct: 68 LSTALFNNGLS-CGACFEIKCQSDGAW---CLPGAIIVTATNFCPPN 110
>At1g26770.1 68414.m03259 expansin, putative (EXP10) similar to
expansin At-EXP1 GI:1041702 from [Arabidopsis thaliana];
alpha-expansin gene family, PMID:11641069
Length = 249
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 364 LGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFTSFMNFCRPS 224
L + LF++ +S C F I +D + CL GS+ + NFC P+
Sbjct: 64 LSTALFNNGLS-CGSCFEIRCENDGKW---CLPGSIVVTATNFCPPN 106
>At1g06420.1 68414.m00679 expressed protein ; expression supported
by MPSS
Length = 221
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 225 EGLQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKV 371
+G +K K V P + L E+W EKE Q E +G ++V
Sbjct: 8 DGKKKKKKSVALIPANYVSILQLQERWLKEKEKKQKEKDFVERGVKQQV 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,234,124
Number of Sequences: 28952
Number of extensions: 261987
Number of successful extensions: 874
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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