Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f03r
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   249   3e-67
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   248   8e-67
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.1  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   4.8  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   8.3  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  249 bits (610), Expect = 3e-67
 Identities = 120/174 (68%), Positives = 137/174 (78%)
 Frame = -2

Query: 725 KVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVI 546
           KVI+D F I EGLM            VDGPS K WR GRGA  NIIP+STGAAKAVGKVI
Sbjct: 162 KVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVI 221

Query: 545 PALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQV 366
           PALNGKLTGMAFRVP  +VSVVDLTV+L KP +YE IK  +K A+EGP+KG+LGYTED V
Sbjct: 222 PALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSV 281

Query: 365 VSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSKD 204
           VS+DF GD+HSSIFDA+AGI L+  FVKL+SWYDNE+GYS RV+DL+ Y  SKD
Sbjct: 282 VSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTASKD 335


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  248 bits (606), Expect = 8e-67
 Identities = 119/174 (68%), Positives = 137/174 (78%)
 Frame = -2

Query: 725 KVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVI 546
           KVI+D F I EGLM            VDGPS K WR GRGA  NIIP+STGAAKAVGKVI
Sbjct: 162 KVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVI 221

Query: 545 PALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQV 366
           PALNGKLTGMAFRVP  +VSVVDLTV+L KP +YE IK  +K A+EGP+KG+LGYTED V
Sbjct: 222 PALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAV 281

Query: 365 VSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSKD 204
           VS+DF GD+HSSIFDA+AGI L+  FVKL+SWYDNE+GYS RV+DL+ Y  +KD
Sbjct: 282 VSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTAAKD 335


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +3

Query: 363 HNLIFSIPE---NALQRTFSCLLDLLLDGF 443
           +++I  IPE   N++Q T  C+LD +LD F
Sbjct: 174 NDMIDEIPEKLENSIQTTIDCVLDFVLDVF 203


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 308 ISLNDNFV-KLISWYDNEYGYSSRVIDLIKYI 216
           +  +DNFV K I+WY N   YSS +    +Y+
Sbjct: 307 LGYSDNFVNKGINWYYNWGSYSSGLSSSFEYV 338


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 174 LTFIHLIKSLIFRLNVLDEINDS---AGITIFIVVPTDQLHKVVIQRNSSGSIKD 329
           + F H I+SL+F L+  +E+  S   +G   +++      +  ++Q+  SGS+ D
Sbjct: 502 IPFAHAIESLLFSLDEENELQVSCAASGTLNYLIRHRLFSYSTLVQKGFSGSVFD 556


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
 Frame = +1

Query: 319 ASKIEECESPMKSEDTT*SSVYPRMPFKGPSAASLTFCLMAS*LAGFPR-RTVRSTTDTL 495
           +SK EE  +   S   T   + P  P+  PS A  +     S  AG+   +T  +TT+  
Sbjct: 303 SSKREEAAAEPSSSTAT--DIPP--PYSTPSVAGASDYSTPS--AGYQTVQTTTTTTEAA 356

Query: 496 ATGTRNAI---PVSLPLRAGITLPTALAAPVEAGMMFC*APRPS 618
           A     A    P  +P  A   + T +AAPV A       P P+
Sbjct: 357 AAQYPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPA 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,795
Number of Sequences: 5004
Number of extensions: 50773
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)