Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f03f
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 284 5e-77
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 278 2e-75
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 231 3e-61
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 226 1e-59
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 202 1e-52
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 176 1e-44
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 163 8e-41
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 33 0.20
07_03_1666 + 28482262-28482385,28482475-28482992 29 3.2
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 29 3.2
08_01_0945 + 9376997-9377818,9378065-9378373,9379510-9379800,938... 29 4.2
04_04_0077 + 22568757-22568895,22568999-22569954,22570021-22570488 29 4.2
04_01_0279 + 3743025-3745169 29 4.2
03_05_0908 + 28686855-28687328 29 4.2
12_01_0935 - 9277421-9277584,9277908-9278111,9280742-9280982,928... 28 5.6
03_03_0278 - 16126803-16129049 28 5.6
02_02_0237 - 8150491-8151066 28 5.6
12_01_0941 - 9316051-9316056,9316747-9317082 28 7.4
12_01_0937 - 9289999-9290046,9290123-9290458 28 7.4
08_02_1628 + 28363476-28363517,28363624-28363791,28363863-283639... 28 7.4
03_04_0122 + 17465804-17465893,17466028-17466147,17466287-174663... 28 7.4
08_01_0369 - 3264479-3265051 27 9.8
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922... 27 9.8
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 284 bits (696), Expect = 5e-77
Identities = 134/184 (72%), Positives = 155/184 (84%), Gaps = 2/184 (1%)
Frame = +3
Query: 84 SKIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEV- 257
+K+GINGFGRIGRLVLR A+ +VVA+NDPFI YM Y+FKYDSTHG FKGS++V
Sbjct: 139 TKVGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGPFKGSIKVV 198
Query: 258 QDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIIS 437
D L +NG K+ + S+RDP IPWG GAEYVVES+GVFTTT+KASAHL+GGAKKV+IS
Sbjct: 199 DDSTLEINGKKVTITSKRDPADIPWGNFGAEYVVESSGVFTTTEKASAHLKGGAKKVVIS 258
Query: 438 APSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDXFEIVEGLMTTVHATT 617
APSADAPMFVVGVN ++YDP V+SNASCTTNCLAPLAKV+H+ F IVEGLMTTVHATT
Sbjct: 259 APSADAPMFVVGVNEKSYDPKMNVVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATT 318
Query: 618 ATQK 629
ATQK
Sbjct: 319 ATQK 322
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 278 bits (682), Expect = 2e-75
Identities = 131/184 (71%), Positives = 155/184 (84%), Gaps = 2/184 (1%)
Frame = +3
Query: 84 SKIGINGFGRIGRLVLRASIEKG-AQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQ 260
+K+GINGFGRIGRLVLR + + +VVA+NDPFI YM Y+FKYDSTHG FKG+++V
Sbjct: 80 TKVGINGFGRIGRLVLRIATNRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGPFKGTIKVV 139
Query: 261 D-GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIIS 437
D L +NG KI+V S+RDP IPWG GAEYVVES+GVFTTT+KASAHL+GGA+KV+IS
Sbjct: 140 DESTLEINGKKISVTSKRDPSDIPWGNFGAEYVVESSGVFTTTEKASAHLKGGARKVVIS 199
Query: 438 APSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDXFEIVEGLMTTVHATT 617
APSADAPMFVVGVN + Y+PS V+SNASCTTNCLAPLAK++H+ F I EGLMTTVHATT
Sbjct: 200 APSADAPMFVVGVNEKNYNPSMNVVSNASCTTNCLAPLAKIVHEEFGIAEGLMTTVHATT 259
Query: 618 ATQK 629
ATQK
Sbjct: 260 ATQK 263
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 231 bits (566), Expect = 3e-61
Identities = 120/207 (57%), Positives = 148/207 (71%), Gaps = 26/207 (12%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLRASIE-KGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGS-VEVQ 260
KIGINGFGRIGRLV R +++ + ++VA+NDPFI DYM Y+FKYD+ HG++K S ++++
Sbjct: 5 KIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIK 64
Query: 261 DGFLVVNGNK-IAVFS-----------------------ERDPKAIPWGKAGAEYVVEST 368
D ++ G K + VF ER+P IPW +AGAEYVVEST
Sbjct: 65 DSKTLLLGEKPVTVFGISLDESNLFMVASVELMFDPVQFERNPDEIPWAEAGAEYVVEST 124
Query: 369 GVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAP 548
GVFT +KA+AHL+GGAKKV+ISAPS DAPMFV GVN + Y ++SNASCTTNCLAP
Sbjct: 125 GVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAP 184
Query: 549 LAKVIHDXFEIVEGLMTTVHATTATQK 629
LAKVIHD F I+EGLMTTVHA TATQK
Sbjct: 185 LAKVIHDNFGIIEGLMTTVHAITATQK 211
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 226 bits (553), Expect = 1e-59
Identities = 117/193 (60%), Positives = 143/193 (74%), Gaps = 17/193 (8%)
Frame = +3
Query: 102 GFGRIGRLVLRASIE-KGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKG-SVEVQDGFLV 275
GFGRIGRLV R +++ + ++VA+NDPFI +YM Y+FKYD+ HG++K V+V+D +
Sbjct: 15 GFGRIGRLVARVALQSEDVELVAVNDPFITTEYMTYMFKYDTVHGQWKHHEVKVKDSKTL 74
Query: 276 VNGNK-IAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHL--------------E 410
+ G K +AVF R+P+ IPW AGAEYVVESTGVFT DKA+AHL +
Sbjct: 75 IFGTKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHLKGQAVDLFSIIFHMQ 134
Query: 411 GGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDXFEIVEG 590
GGAKKV+ISAPS DAPMFVVGVN + Y ++SNASCTTNCLAPLAKVI+D F IVEG
Sbjct: 135 GGAKKVVISAPSKDAPMFVVGVNEKEYKSDVNIVSNASCTTNCLAPLAKVINDRFGIVEG 194
Query: 591 LMTTVHATTATQK 629
LMTTVHA TATQK
Sbjct: 195 LMTTVHAITATQK 207
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 202 bits (494), Expect = 1e-52
Identities = 97/146 (66%), Positives = 118/146 (80%), Gaps = 2/146 (1%)
Frame = +3
Query: 198 MVYLFKYDSTHGRFKG-SVEVQDGFLVVNGNK-IAVFSERDPKAIPWGKAGAEYVVESTG 371
+ Y+FKYD+ HG++K V+V+D ++ G K + VF R+P+ IPWG+ GAE+VVESTG
Sbjct: 91 VTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVTVFGCRNPEEIPWGETGAEFVVESTG 150
Query: 372 VFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPL 551
VFT DKA+AHL+GGAKKV+ISAPS DAPMFVVGVN + Y P ++SNASCTTNCLAPL
Sbjct: 151 VFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPDIDIVSNASCTTNCLAPL 210
Query: 552 AKVIHDXFEIVEGLMTTVHATTATQK 629
AKVI+D F IVEGLMTTVHA TATQK
Sbjct: 211 AKVINDRFGIVEGLMTTVHAITATQK 236
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLRASIEK-GAQVVAINDPFIGLDYMVYLF 212
KIGINGFGRIGRLV R +++ ++VA+NDPFI DYM+ F
Sbjct: 5 KIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTDYMICEF 47
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 176 bits (428), Expect = 1e-44
Identities = 92/189 (48%), Positives = 119/189 (62%), Gaps = 6/189 (3%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLRASIEKG----AQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVE 254
K+ INGFGRIGR LR +G V+AIND G+ +L KYDST G F V+
Sbjct: 68 KVAINGFGRIGRNFLRCWHGRGDSSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVK 126
Query: 255 -VQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVI 431
V D + V+G I V S+R+P +PWG+ G + V+E TGVF D A H++ GAKKV+
Sbjct: 127 PVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDRDGAGKHIQAGAKKVL 186
Query: 432 ISAPS-ADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDXFEIVEGLMTTVH 608
I+AP D P +VVGVN + Y P +ISNASCTTNCLAP K++ F I++G MTT H
Sbjct: 187 ITAPGKGDIPTYVVGVNADQYSPDEPIISNASCTTNCLAPFVKILDQKFGIIKGTMTTTH 246
Query: 609 ATTATQKLL 635
+ T Q+LL
Sbjct: 247 SYTGDQRLL 255
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 163 bits (397), Expect = 8e-41
Identities = 92/195 (47%), Positives = 119/195 (61%), Gaps = 7/195 (3%)
Frame = +3
Query: 72 ADNMSKIGINGFGRIGRLVLRASIEKG---AQVVAINDPFIGLDYMVYLFKYDSTHGRFK 242
A+ K+ INGFGRIGR LR E+ +VV +ND G+ +L KYDS G FK
Sbjct: 74 AEAKLKVAINGFGRIGRNFLRCWHERENSPLEVVVVNDSG-GVRNASHLLKYDSMLGTFK 132
Query: 243 GSVE-VQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGA 419
V+ V D + V+G I V S RDP +PW + G + V+E TGVF A H++ GA
Sbjct: 133 ADVKIVDDQTISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 192
Query: 420 KKVIISAPS--ADAPMFVVGVNLEAYDPSF-KVISNASCTTNCLAPLAKVIHDXFEIVEG 590
KKVII+AP+ AD P +V+GVN Y +ISNASCTTNCLAP K++ + F IV+G
Sbjct: 193 KKVIITAPAKGADIPTYVLGVNEGDYSHEVANIISNASCTTNCLAPFVKILDEEFGIVKG 252
Query: 591 LMTTVHATTATQKLL 635
MTT H+ T Q+LL
Sbjct: 253 TMTTTHSYTGDQRLL 267
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 282 GNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDK 392
GNK+ D + + WGK E + E G+ T+T+K
Sbjct: 445 GNKVDEMKSGDRQHLWWGKRNVEQITEKLGLLTSTEK 481
>07_03_1666 + 28482262-28482385,28482475-28482992
Length = 213
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 478 LTPTTNMGASALGADIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHG 326
+T + MG+ G+ + + PP + S+ TT AP PHG
Sbjct: 81 VTSSEMMGSLMSGSGRVAVITPPPAASGGASLPAAAAAGGTTLVAPVVPHG 131
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 96 INGFGRIGRLVLRASIEKGAQVVAIND 176
I GFG +G R EKG +V+A+ D
Sbjct: 211 IQGFGNVGSWAARIIHEKGGKVIALGD 237
>08_01_0945 +
9376997-9377818,9378065-9378373,9379510-9379800,
9380060-9380173,9380280-9380981
Length = 745
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 241 RAVLRFRMDSLLLTVTKLPFSQKGTLRPFHGEKLGLNML*SLLVSLPLQIKHL 399
RA+LRF LLL++ L F L+ +H + + L LP ++HL
Sbjct: 108 RAMLRFLRGFLLLSLAMLAFETVAHLKGWHFPRSAAGLPEKYLRRLPEHLQHL 160
>04_04_0077 + 22568757-22568895,22568999-22569954,22570021-22570488
Length = 520
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +3
Query: 234 RFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPW------GKAGAEYVVESTGVFTTTDKA 395
RF+GS+ V F + G IA + +PW G AGA V G F TD
Sbjct: 166 RFRGSLTVGFQFFLSLGILIANLTNYGTARVPWGWRLSLGLAGAPAVFIVVGAFFLTDTP 225
Query: 396 SAHLEGG 416
S+ + G
Sbjct: 226 SSFVMRG 232
>04_01_0279 + 3743025-3745169
Length = 714
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 127 CSVLLLKRELKWSL*MTLSSVLTIWFIFS-SMIPPMAVLRAVLRFRMD 267
C V+ ++ L + + T ++V+ WF F+ ++ P+AV A+ FR++
Sbjct: 240 CRVVEMELSLMYDILYTKAAVMHTWFGFAIRVVSPLAVAAALGLFRLE 287
>03_05_0908 + 28686855-28687328
Length = 157
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +3
Query: 222 STHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASA 401
S+HG E+Q F G+ A DP+ I G AG V + V T T A A
Sbjct: 25 SSHGARPSPRELQGWFAAAAGSSSAEKQLVDPRIIAAGAAGRVADVVAAPVMTVTTPAGA 84
>12_01_0935 -
9277421-9277584,9277908-9278111,9280742-9280982,
9282165-9282494
Length = 312
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 96 INGFGRIGRLVLRASIEKGAQVVAINDPFIGLD 194
+ G G IGR ++ AS+ +G + P IGLD
Sbjct: 9 VGGTGYIGRRIVAASLAEGHPTFVLLRPEIGLD 41
>03_03_0278 - 16126803-16129049
Length = 748
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 509 HLKCFLHHKLSCPTCK 556
+LK +L+H L CPTC+
Sbjct: 220 YLKVYLNHNLLCPTCR 235
>02_02_0237 - 8150491-8151066
Length = 191
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 629 FLCSSCGMNSSHQALNNFKXIMNNLCKWGKTVCGARS 519
++C SCG + SH L + + + C+ K AR+
Sbjct: 139 YMCVSCGQHDSHTQLVGYPDVRSQSCRVIKPTAFARN 175
>12_01_0941 - 9316051-9316056,9316747-9317082
Length = 113
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 96 INGFGRIGRLVLRASIEKGAQVVAINDPFIGL--DYMVYLFKYDSTHGR-FKGSVEVQDG 266
+ G G IGR ++ AS+ +G + P IGL D + L + + R + S++ DG
Sbjct: 11 VGGSGYIGRRIVAASLAEGHPTFVLLRPEIGLNIDKLQILLAFKAQGARLLEASLDDHDG 70
Query: 267 FL 272
+
Sbjct: 71 LV 72
>12_01_0937 - 9289999-9290046,9290123-9290458
Length = 127
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 96 INGFGRIGRLVLRASIEKGAQVVAINDPFIGLD 194
+ G G IGR ++ AS+ G + P IGLD
Sbjct: 11 VGGTGHIGRRIVAASLAAGHPTSVLLRPEIGLD 43
>08_02_1628 +
28363476-28363517,28363624-28363791,28363863-28363937,
28364018-28364070,28364559-28364709,28365079-28365261,
28366110-28366236,28366731-28366831,28367156-28367294,
28367359-28367420,28367702-28367754,28368266-28368290
Length = 392
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 487 ASRLTPTTNMGASALGADIITFLAPPSK*ADALSVVVKTPV 365
+ L TT G + +GA + F++ PSK SVVV V
Sbjct: 327 SEELIDTTGAGDAFIGAVLYAFVSGPSKFCSVKSVVVNLAV 367
>03_04_0122 +
17465804-17465893,17466028-17466147,17466287-17466317,
17466978-17467153,17468051-17468142,17468259-17468340,
17468498-17468566,17468655-17468759,17471246-17471342,
17471438-17471676,17472191-17472949,17473079-17473297
Length = 692
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 1 DFKTPSCTERTWWWSVIQQIFYNL--PITC--QKLESMDLAALAVW 126
+F TP +R WWW+ Q Y + P+T +K+ + A+ W
Sbjct: 104 EFGTPVQCQRLWWWTRRQNNTYRVDRPLTTEEEKIPVVHTLAIPKW 149
>08_01_0369 - 3264479-3265051
Length = 190
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 629 FLCSSCGMNSSHQALNNFKXIMNNLCKWGKTVCGARS 519
++C SCG + SH L + + + C+ K AR+
Sbjct: 138 YMCVSCGQHDSHTQLVAYPDVHSRSCRMIKPTMFARN 174
>03_05_0398 +
23790257-23790323,23791116-23791339,23792208-23792275,
23794738-23794980,23795108-23795237,23797235-23797954
Length = 483
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 587 LNNFKXIMNNLCKWGKTVCGARSI*DDL 504
LN +++L + G T CGARSI DD+
Sbjct: 426 LNENATGVHDLYRGGATACGARSIWDDM 453
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,601,862
Number of Sequences: 37544
Number of extensions: 402746
Number of successful extensions: 1107
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -